View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17894_low_11 (Length: 461)
Name: NF17894_low_11
Description: NF17894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17894_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 7 - 342
Target Start/End: Original strand, 54080249 - 54080584
Alignment:
| Q |
7 |
tccaagaatatgatcattaacaaatgaatccaaaagaagagttcagaaatgatcaatgatcccccactgagtaagtcactctcagaagggtaaatataat |
106 |
Q |
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| T |
54080249 |
tccaaaaatatgatcattaacaaatgaatccaaaagaagagttcagaaatgatcaatgatcccctactgagtaagtcactctcagaagggtaaatataat |
54080348 |
T |
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| Q |
107 |
agcattcttgaaccatgtataagaatgaacacctagatatagtaatctaagtgcaaattggtcaccatgcaacaaaaagttaatgatatatataccacta |
206 |
Q |
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| T |
54080349 |
agcattcttgaaccttgtataagaatgaacacctagatatagtaatctaagtgcaaattggtcaccatgcaacaaaaagttaatgatatatataccacta |
54080448 |
T |
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| Q |
207 |
ttaccttatacaaaacttagggaactgacagtggcaccaccactattggcaaaacaaaaagtagactttctggtgcacagacaaaatccctacctcacct |
306 |
Q |
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| T |
54080449 |
ttaccttatacaaaacttaggagactgacagtggcaccaccactattggcaaaacaaaaagtagactttctggtgcacagacaaaatccctacctcacct |
54080548 |
T |
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| Q |
307 |
ataaccatgagatgagctgttcacgcaaaggatcag |
342 |
Q |
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| T |
54080549 |
ataaccatgagatgagctgtccacgcaaaggatcag |
54080584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 375 - 443
Target Start/End: Original strand, 54080620 - 54080688
Alignment:
| Q |
375 |
gagcaaaaacaccatgtcatattatcatgcatatagtcaataataaacagcctttcatcctccactatg |
443 |
Q |
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| T |
54080620 |
gagcaaaaacaccatgtcatattatcatgcatatagtcaataataaacagcctttcatcctccactatg |
54080688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 102 - 221
Target Start/End: Original strand, 54083555 - 54083669
Alignment:
| Q |
102 |
ataatagcattcttgaaccatgtataagaatgaacacctagatatagtaatctaagtgcaaattggtcaccatgcaacaaaaagttaatgatatatatac |
201 |
Q |
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| T |
54083555 |
ataaaagcattcttgaaccttccataagaatgagcacc-agatatagtaatctaggtgcaaattgatcatcatgcaacaaaaagttaatgatat----ac |
54083649 |
T |
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| Q |
202 |
cactattaccttatacaaaa |
221 |
Q |
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| T |
54083650 |
cactactagcttatacaaaa |
54083669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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