View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17894_low_12 (Length: 445)
Name: NF17894_low_12
Description: NF17894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17894_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 146 - 427
Target Start/End: Complemental strand, 4211813 - 4211532
Alignment:
| Q |
146 |
cacacaaaacctaaaacatgttggaacaatcattaacatcatcatcaccaacattctgggctggtctctacagctggtttactcccaccatcttcttcct |
245 |
Q |
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| T |
4211813 |
cacacaaaacctaaaacatgttggaacaatcattaacatcatcatcaccaacattctgggctggtctctacagctggtttactcccaccatcttcttcct |
4211714 |
T |
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| Q |
246 |
cctccttcaacttgtcatagctaccatttacatcacttccactcttgccaatgccacccaaaaacatctccaacaacaagatcctaactttcaacaaccc |
345 |
Q |
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| T |
4211713 |
cctccttcaacttgtcatagctaccatttacatcacttccactcttgccaatgccacccaaaaacatctccaacaacaagatcctaactttcaacaaccc |
4211614 |
T |
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| Q |
346 |
catcaccaacaactctttagatctccttctgttttacaaagactcaaatccatcaacttttactcttaccaaccttatagat |
427 |
Q |
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| T |
4211613 |
catcaccaacaactctttagatctccttctgttttacaaagactcaaatccatcaacttttactcttaccaaccttatagat |
4211532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 134
Target Start/End: Complemental strand, 4211846 - 4211807
Alignment:
| Q |
95 |
cctctcttcatctctccaatctcctccaccctacacacaa |
134 |
Q |
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| T |
4211846 |
cctctcttcatctctccaatctcctccaccctacacacaa |
4211807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 407
Target Start/End: Complemental strand, 4211458 - 4211414
Alignment:
| Q |
363 |
tagatctccttctgttttacaaagactcaaatccatcaactttta |
407 |
Q |
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| T |
4211458 |
tagatctccttctgttttacaaagactcaaatccattaaccttta |
4211414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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