View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17894_low_13 (Length: 432)
Name: NF17894_low_13
Description: NF17894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17894_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 23 - 415
Target Start/End: Complemental strand, 3863831 - 3863439
Alignment:
| Q |
23 |
aaccacactcaagagaggtattaaatattgaagtagtatatgtcaattctatgatgtgcaaataaaataaatcctacatcatacacaaattaacttctac |
122 |
Q |
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| T |
3863831 |
aaccacactcaagagaggtattaaatattgaagtagtatatgtcaattctatgatgtgcaaataagataaatcctgcatcatacacaaattaacttctac |
3863732 |
T |
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| Q |
123 |
tattggataagtagtaaatcacactatttgattgaacgagatatgataaacttattgatcaaataattaaaaacacagttgttcatagactccttaatat |
222 |
Q |
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| T |
3863731 |
tattggataagtagtaaatcacactatttgattgaacgagatatgataaacttattgatcaaataattaaaaacacagttgttcatagactccttaatat |
3863632 |
T |
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| Q |
223 |
gtgatggtgcctccaacaaaaggccacataaatcataaactaatattgccaaataagaagctattgcagattccattatttctttcaatcgcaatttcta |
322 |
Q |
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| T |
3863631 |
gtgatggtgcctccaacaaaaggccacataaatcataaactaatattgccaaataagaagctattgcagattccattatttctttccatcgcaatttcta |
3863532 |
T |
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| Q |
323 |
taataagcatgcaacaataccgtgttggtgctggtttacatgtatttgtgataacaatcatgagctggtatgattcggagttcggactgatgg |
415 |
Q |
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| T |
3863531 |
aaataagcatgcaacactaccgtgttggtgctggtttacatgtatttgtgataacaatcatgagctggtatgattcggagttcggacagatgg |
3863439 |
T |
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