View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17894_low_15 (Length: 345)
Name: NF17894_low_15
Description: NF17894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17894_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 12 - 331
Target Start/End: Complemental strand, 43896181 - 43895862
Alignment:
| Q |
12 |
atgaatatggtataaaactcaacagttagtttagatgtgatcaaagaaacacgagtttgacataaaaacttaaaatagttaatttataaagaagacctcc |
111 |
Q |
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| T |
43896181 |
atgaatatggtataaaactcaacagttagtttagatgtgatcaaagaaacacgagtttgacataaaaacttaaaatagttaatttataaagaagacctcc |
43896082 |
T |
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| Q |
112 |
gactaataagttgattttgtaaagataaattatgttcttatcaaaacatgatagctatgcccatatattataacaagttcgtgcaaaacttacaaataga |
211 |
Q |
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| T |
43896081 |
gactaataagttgattttgtaaagataaattatgttcttatcaaaacatgatagctatgcccatatattataacaagttcgtgcaaaacttacaagtaga |
43895982 |
T |
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| Q |
212 |
ttttgtataagctcatgcaaaactttgttgacaaagtacatctgataacctnnnnnnnnttcaaacgtacaggacccgtacctgcgagcatggccgttgg |
311 |
Q |
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| T |
43895981 |
ttttgtataagctcatgcaaaactttgttgacaaagtacatctgataacctaaaaaaaaatcaaacgtacaggacccgtacctgcgagcatggccgttgg |
43895882 |
T |
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| Q |
312 |
tgggagacgcggtggaggat |
331 |
Q |
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| T |
43895881 |
tgggagacgcggtggaggat |
43895862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 43907415 - 43907366
Alignment:
| Q |
282 |
aggacccgtacctgcgagcatggccgttggtgggagacgcggtggaggat |
331 |
Q |
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| T |
43907415 |
aggaccagtacctgcgagcatggccgctggtgggagaggcggtggaggat |
43907366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 43907506 - 43907466
Alignment:
| Q |
218 |
ataagctcatgcaaaactttgttgacaaagtacatctgata |
258 |
Q |
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| T |
43907506 |
ataagctcatgcaaaactttgttgtcgaagtacatctgata |
43907466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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