View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17894_low_17 (Length: 287)
Name: NF17894_low_17
Description: NF17894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17894_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 82 - 228
Target Start/End: Complemental strand, 16821822 - 16821676
Alignment:
| Q |
82 |
tagcattacaattgtatatcaaatcaaatcaaataaacatttaaatgtaagtgtcaaaaccatataaaatcaaagtcataagataaaaacctaaccacca |
181 |
Q |
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| T |
16821822 |
tagcattacaattgtatatcaaatcaaatcaaataaacatttaaatgtaagtgtcaaaaccatataaaatcaaagtcataagataaaaacctaaccacca |
16821723 |
T |
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| Q |
182 |
agaagaagtcacaatctaaagattaattataatatgtgtccttcact |
228 |
Q |
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| T |
16821722 |
agaagaagtcacaatctaaagattaattataatatgggtccttcact |
16821676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 16821911 - 16821852
Alignment:
| Q |
18 |
atctaggacctacattttgcttttaagaaaatcttcactacctgggtaatctatagcccc |
77 |
Q |
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| T |
16821911 |
atctaggacctacattttgcttttaagaaaatcttcactacctgggtaatctatagcccc |
16821852 |
T |
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