View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17894_low_18 (Length: 280)
Name: NF17894_low_18
Description: NF17894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17894_low_18 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 280
Target Start/End: Original strand, 2557357 - 2557623
Alignment:
| Q |
14 |
agtataatctaatagtataaccatagtttccaagcatagtactttcatacaaattcatactaataaaaaacatttcgattttttcattcttttgtcttca |
113 |
Q |
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| T |
2557357 |
agtataatctaatagtataaccatagtttccaagcatagtactttcatacaaattcatactaataaaaaacatttcgattttttcattcttttgtcttca |
2557456 |
T |
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| Q |
114 |
agtttcttagcttccaattccaagctgtcttagacaactatgttttatttcaaccattcgtatgtattcaagtaaaaatcaaagctctcagaatcaggat |
213 |
Q |
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| T |
2557457 |
agtttcttagcttccaattccaagctatcttagacaactatgttgtatttcaaccattcatatgtattcaagtaaaaatcaaagctctcagaatcaggat |
2557556 |
T |
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| Q |
214 |
gatcgatttctgacacagtattagagcctcaatgatctagtgctccagagttttatatttcttgcct |
280 |
Q |
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| T |
2557557 |
aatcgatttctgacacagtattagagcctcaatgatctagtgctccagagttttatatttcttgcct |
2557623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 280
Target Start/End: Original strand, 2567217 - 2567478
Alignment:
| Q |
13 |
aagtataatctaatagtataaccatagtttccaagcatagtact---ttcatacaaattcatactaataaaaaacatttcgattttttcattcttttgtc |
109 |
Q |
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| T |
2567217 |
aagtataatctaagagtacaaccatagtttccaagcatagtactactttcgtgcaaatttatactaa---agaacaatttggtttttacattcttttgtc |
2567313 |
T |
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| Q |
110 |
ttcaagtttcttagcttccaattccaagctgtcttagacaactatgttttatttcaaccattcgtatgtattcaagtaaaaatcaaagctctcagaatca |
209 |
Q |
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| T |
2567314 |
ttctagtttcttagtttccaa------gctatcttagacaactatgttgtatttcaaccattcatatgtattcaagtaaaaaccgaagctctcagaatca |
2567407 |
T |
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| Q |
210 |
ggatgatcgatttctgacacagtattagagcctcaatgatctagtgctccagagttttatatttcttgcct |
280 |
Q |
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| T |
2567408 |
ggatgattgatttccgacatggtattagagcctctttgatctagtacggcagagctttatatttcttgcct |
2567478 |
T |
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