View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17894_low_24 (Length: 261)
Name: NF17894_low_24
Description: NF17894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17894_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 37105133 - 37104984
Alignment:
| Q |
10 |
aaaaatatagaattgattttgttaattgaattagtctctagaa-gtg-----aaacaaaggaaattgttattttcttcctttcatttataatttttctac |
103 |
Q |
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| T |
37105133 |
aaaaatatagaattgattttgttaattgaattagtctctagaaggtgaaacaaaacaaaggaaattgttattttcttcctttcatttataatttttctac |
37105034 |
T |
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| Q |
104 |
agaagtgaaacaagaaattaaaactgaacgaattgtttcttacattgtta |
153 |
Q |
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| T |
37105033 |
agaagtgaaacaagaaattaaaactgaacgaattgtttcttacattgtta |
37104984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 37104955 - 37104893
Alignment:
| Q |
184 |
aatagaacgaaacaaagaaatggatgtaatgagcaatgaatatccaaaatttcctatcatcat |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37104955 |
aatagaacgaaacaaagaaatggatgtaatgagcaatgaatatccaaaatttcctatcatcat |
37104893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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