View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17894_low_25 (Length: 260)
Name: NF17894_low_25
Description: NF17894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17894_low_25 |
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| [»] chr3 (9 HSPs) |
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| [»] chr7 (10 HSPs) |
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| [»] chr1 (10 HSPs) |
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| [»] chr2 (10 HSPs) |
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| [»] chr4 (8 HSPs) |
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| [»] chr5 (10 HSPs) |
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| [»] chr8 (9 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 260
Target Start/End: Original strand, 54346527 - 54346775
Alignment:
| Q |
12 |
atcatctatataggttggaagcggcctcgagagagttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggcggcc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54346527 |
atcatctatataggttggaagcggcctcgagaaggttggatcaagcttaatagtgatggtgcttgcaaggatatgggggttattgctggatgtggcggcc |
54346626 |
T |
|
| Q |
112 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggttt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
54346627 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtggggactatatttgggttt |
54346726 |
T |
|
| Q |
212 |
ggacatggcttggagggaacattactctcatcttatagtggaaagtgat |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54346727 |
ggacatggcttggagggaacattactctcatcttatagtggaaagtgat |
54346775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 27156573 - 27156326
Alignment:
| Q |
12 |
atcatctatataggttggaagcggcctcgagagagttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggcggcc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
27156573 |
atcatctatataggttggaagcggcctcgaaaaggttggatcaagcttaatagtgatggtgcttgcaaggatatgggggttatt-ctggatgtggcggcc |
27156475 |
T |
|
| Q |
112 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggttt |
211 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| |
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|
| T |
27156474 |
tttttcatgattcagacggtagatggatcaaaggctacactaagaagattagagcttgtgatgccttacatgctgagatgtgaggactatatttgggttt |
27156375 |
T |
|
| Q |
212 |
ggacatggcttggagggaacattactctcatcttatagtggaaagtgat |
260 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27156374 |
ggacatagcttggagggaacattactctcatcttatagtggaaagtgat |
27156326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 46 - 259
Target Start/End: Original strand, 42794312 - 42794525
Alignment:
| Q |
46 |
gttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggcggcctttttcgtgattcagacggtagatggatcaaagg |
145 |
Q |
| |
|
||||||||||||| || || || | ||| |||||||||||||| |||| | || ||||| || ||||||| ||| |||| |||| |||||| ||||| |
|
|
| T |
42794312 |
gttggatcaagctcaacagcgacggtgcctgcaaggatatgggtcatatttccggttgtggtggtatttttcgcgatgcagatggtaaatggattaaagg |
42794411 |
T |
|
| Q |
146 |
ctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggagggaacattactctcatctt |
245 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||| | || |||||||||||||| |||| ||||||| |
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|
| T |
42794412 |
ctacactaagaagattggagcttgtgatgtcttacatgctgagatgtgggggttgtatttgggtatagagatggcttggagggagcattttgatcatctt |
42794511 |
T |
|
| Q |
246 |
atagtggaaagtga |
259 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
42794512 |
attgtggaaagtga |
42794525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 46 - 259
Target Start/End: Complemental strand, 54812621 - 54812408
Alignment:
| Q |
46 |
gttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggcggcctttttcgtgattcagacggtagatggatcaaagg |
145 |
Q |
| |
|
||||||||||||| || | || | ||| |||||||||||||| |||| | || ||||| || ||||||||||| |||| |||| |||||| ||||| |
|
|
| T |
54812621 |
gttggatcaagctcaacggcgacggtgcctgcaaggatatgggtcatatttccggttgtggtggtatttttcgtgatgcagatggtaaatggattaaagg |
54812522 |
T |
|
| Q |
146 |
ctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggagggaacattactctcatctt |
245 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||| | || |||||||||||||| |||| ||||||| |
|
|
| T |
54812521 |
ctacactaagaagattgaagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtatagagatggcttggagggagcattttgatcatctt |
54812422 |
T |
|
| Q |
246 |
atagtggaaagtga |
259 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
54812421 |
attgtggaaagtga |
54812408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 46 - 259
Target Start/End: Original strand, 46428382 - 46428595
Alignment:
| Q |
46 |
gttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggcggcctttttcgtgattcagacggtagatggatcaaagg |
145 |
Q |
| |
|
|||| |||||||| || || || | ||| |||||||||||||| |||| | || ||||| || ||||||||||| |||| |||| |||||| ||||| |
|
|
| T |
46428382 |
gttgaatcaagctcaacagcgacggtgcctgcaaggatatgggtcatatttccggttgtggtggtatttttcgtgatgcagatggtaaatggattaaagg |
46428481 |
T |
|
| Q |
146 |
ctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggagggaacattactctcatctt |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| | || |||||||| ||||| |||| ||||||| |
|
|
| T |
46428482 |
ctacactaagaagattggagcttgtgatgccttacatgttgagatgtgggggttgtatttgggtatagagatggcttgcagggagcattttgatcatctt |
46428581 |
T |
|
| Q |
246 |
atagtggaaagtga |
259 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
46428582 |
attgtggaaagtga |
46428595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 46 - 259
Target Start/End: Complemental strand, 43912625 - 43912412
Alignment:
| Q |
46 |
gttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggcggcctttttcgtgattcagacggtagatggatcaaagg |
145 |
Q |
| |
|
||||||||||||| || ||||| ||||| |||||||||||||| |||| || ||||| | ||||||||||| ||| | || |||||| ||||| |
|
|
| T |
43912625 |
gttggatcaagctcaacagtgacgatgcctgcaaggatatgggtcatattttcggttgtggtgatatttttcgtgatgtagatgataaatggattaaagg |
43912526 |
T |
|
| Q |
146 |
ctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggagggaacattactctcatctt |
245 |
Q |
| |
|
|||| |||||||||| ||||||||||| ||||||||| ||||||||| ||| | ||||||||| | || |||||||||||||| |||| ||||||| |
|
|
| T |
43912525 |
ctacgttaagaagatttgagcttgtgataccttacatgatgagatgtgagggttgtatttgggtatagagatggcttggagggagcattttgatcatctt |
43912426 |
T |
|
| Q |
246 |
atagtggaaagtga |
259 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
43912425 |
atagttgaaagtga |
43912412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 34265151 - 34265244
Alignment:
| Q |
102 |
tgtggcggcctttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtggg |
195 |
Q |
| |
|
|||||| | ||| ||||||||||||| |||| |||||| ||| | |||||||| ||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
34265151 |
tgtggcagtcttattcgtgattcagatggtaaatggattaaatgttacactaaaaagattgaagcttgtgatgtcttacatgctgagatgtggg |
34265244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 259
Target Start/End: Complemental strand, 43328992 - 43328864
Alignment:
| Q |
131 |
tagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggagggaa |
230 |
Q |
| |
|
||||||||||||||||||| ||||| |||||| |||||||| || |||||||| |||||||| | || | ||||||||||| || |||||||| |
|
|
| T |
43328992 |
tagatggatcaaaggctacttcaagaatattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtacctaggtttggacatagcgtggagggag |
43328893 |
T |
|
| Q |
231 |
cattactctcatcttatagtggaaagtga |
259 |
Q |
| |
|
|| | |||||||||||||||| ||||| |
|
|
| T |
43328892 |
aataccactcatcttatagtggagagtga |
43328864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 259
Target Start/End: Complemental strand, 51841512 - 51841354
Alignment:
| Q |
101 |
atgtggcggcctttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggcta |
200 |
Q |
| |
|
|||||| || |||||| |||||||||| | |||||| || ||||| |||||||| || ||| || || |||| |||| | | ||||||||| | | | |
|
|
| T |
51841512 |
atgtgggggtcttttttgtgattcagatgatagatgcattaaaggttacactaaaaaatttgttgcgtgcgatgacttatacgttgagatgtgagagttg |
51841413 |
T |
|
| Q |
201 |
tatttgggtttggacatggcttggagggaacattactctcatcttatagtggaaagtga |
259 |
Q |
| |
|
||||| || ||||| |||||||||| || |||| ||||||||||||||||| ||||| |
|
|
| T |
51841412 |
tatttaggattggatatggcttggaaagagcatttttctcatcttatagtggagagtga |
51841354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 8020151 - 8019903
Alignment:
| Q |
12 |
atcatctatataggttggaagcggcctcgagagagttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggcggcc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8020151 |
atcatctatataggttggaagcggcctcgagaaggttggatcaagcttaatagtgatggtgcttgcaaggatatgggggttattgttggatgtggcggcc |
8020052 |
T |
|
| Q |
112 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggttt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8020051 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtggggactatatttgggttt |
8019952 |
T |
|
| Q |
212 |
ggacatggcttggagggaacattactctcatcttatagtggaaagtgat |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8019951 |
ggacatggcttggagggaacattactctcatcttatagtggaaagtgat |
8019903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 260
Target Start/End: Original strand, 48618726 - 48618974
Alignment:
| Q |
12 |
atcatctatataggttggaagcggcctcgagagagttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggcggcc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
48618726 |
atcatctatataggttggaagcggcctcaagaaggttggatcaagcttaatagtgatggtgcttgcaaggttatgggggttattgccggatgtggcggcc |
48618825 |
T |
|
| Q |
112 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggttt |
211 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
48618826 |
ttttttgtgattcagatggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttggattt |
48618925 |
T |
|
| Q |
212 |
ggacatggcttggagggaacattactctcatcttatagtggaaagtgat |
260 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
48618926 |
ggacatggcttggagggaacattactcttatcttatagtggaaagtgat |
48618974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 260
Target Start/End: Complemental strand, 29214132 - 29213888
Alignment:
| Q |
15 |
atctatataggttggaagcggcctcgagagagttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggcggccttt |
114 |
Q |
| |
|
||||||||||||||||||||| ||| || ||||||||||||| |||||||||| |||||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
29214132 |
atctatataggttggaagcggtctcatgaaggttggatcaagctcaatagtgatggtgcttgcaagaatatggggattatttttggatgtggcggccttt |
29214033 |
T |
|
| Q |
115 |
ttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttgga |
214 |
Q |
| |
|
||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29214032 |
ttcgtgatttagacggtagatgggtcaaatgctacactaagaagattagagcttgtgatgccttgcatgctgagatgt-ggggctatatttgggtttgga |
29213934 |
T |
|
| Q |
215 |
catggcttggagggaacattactctcatcttatagtggaaagtgat |
260 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
29213933 |
catggcttggagggaacatgactcttatcttgtagtggaaagtgat |
29213888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 24473236 - 24473487
Alignment:
| Q |
8 |
ggacatcatctatataggttggaagcggcctcgagagagttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggc |
107 |
Q |
| |
|
|||||| ||||| ||||| ||||| | |||| || |||||||||||||| || || || ||||| |||||||||||||| |||| |||| | ||| |
|
|
| T |
24473236 |
ggacattatctacataggatggaaacaacctcaggatagttggatcaagctcaacagcgacgatgcctgcaaggatatgggtcatatttctgggtttggt |
24473335 |
T |
|
| Q |
108 |
ggcctttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgg |
207 |
Q |
| |
|
|| ||||||||||| |||| |||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
24473336 |
ggtatttttcgtgatgcagatggtaaatggattaaaggttacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgg |
24473435 |
T |
|
| Q |
208 |
gtttggacatggcttggagggaacattactctcatcttatagtggaaagtga |
259 |
Q |
| |
|
| | || ||||||||||| || |||| ||||||||| ||||||||||| |
|
|
| T |
24473436 |
atatagagatggcttggagtgagcattttgatcatcttattgtggaaagtga |
24473487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 25713258 - 25713360
Alignment:
| Q |
12 |
atcatctatataggttggaagcggcctcgagagagttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggcggcc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||||||| || |||||||||||||||||||| ||||||||||||| |||||||||||| | |
|
|
| T |
25713258 |
atcatctatataggttggaagcggcctcaagaaggttggatcaagctcaacagtgatgatgcttgcaaggacatgggggttattgttggatgtggcggtc |
25713357 |
T |
|
| Q |
112 |
ttt |
114 |
Q |
| |
|
||| |
|
|
| T |
25713358 |
ttt |
25713360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 102 - 256
Target Start/End: Complemental strand, 29760161 - 29760006
Alignment:
| Q |
102 |
tgtggcggcctttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtggggg-cta |
200 |
Q |
| |
|
||||| ||||||||| ||||| || |||| | ||||||||| || || ||||||||||||||| ||||||||| ||||||| |||||| |||||| | |
|
|
| T |
29760161 |
tgtggtggccttttttgtgatacaaacggaaaatggatcaatggttatgctaagaagattggagtttgtgatgctttacatgttgagatatgggggattg |
29760062 |
T |
|
| Q |
201 |
tatttgggtttggacatggcttggagggaacattactctcatcttatagtggaaag |
256 |
Q |
| |
|
|| |||| ||||| ||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
29760061 |
tacttggccttggaaatggcttggagggaacatttttctcaccttatagtggaaag |
29760006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 259
Target Start/End: Original strand, 46045724 - 46045851
Alignment:
| Q |
132 |
agatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggagggaac |
231 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| || |||||||| |||||||| | || | |||||||||||||| |||||||| |
|
|
| T |
46045724 |
agatggatcaaaggctacttcaagaagattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtaccttggtttggacatggcgtggagggaga |
46045823 |
T |
|
| Q |
232 |
attactctcatcttatagtggaaagtga |
259 |
Q |
| |
|
|| | |||||||||||||||| ||||| |
|
|
| T |
46045824 |
ataccactcatcttatagtggagagtga |
46045851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 259
Target Start/End: Original strand, 8035528 - 8035655
Alignment:
| Q |
132 |
agatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggagggaac |
231 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| || |||||||| |||||||| | || | ||||||||||||| |||||||| |
|
|
| T |
8035528 |
agatggatcaaaggctacttcaagaagattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtacctaggtttggacatggtgtggagggaga |
8035627 |
T |
|
| Q |
232 |
attactctcatcttatagtggaaagtga |
259 |
Q |
| |
|
|| | ||||||||||||||| ||||| |
|
|
| T |
8035628 |
ataccattcatcttatagtggagagtga |
8035655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 259
Target Start/End: Complemental strand, 38110964 - 38110837
Alignment:
| Q |
132 |
agatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggagggaac |
231 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| || |||||||| || ||||| | || | |||||| ||||||| |||||||| |
|
|
| T |
38110964 |
agatggatcaaaggctacttcaagaagattggaatgtgtgatgcttttcatgctgaaatatggggcatgtacctaggtttgaacatggcgtggagggaga |
38110865 |
T |
|
| Q |
232 |
attactctcatcttatagtggaaagtga |
259 |
Q |
| |
|
|| | |||||||||||||||| ||||| |
|
|
| T |
38110864 |
ataccactcatcttatagtggagagtga |
38110837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 259
Target Start/End: Complemental strand, 45033968 - 45033841
Alignment:
| Q |
132 |
agatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggagggaac |
231 |
Q |
| |
|
|||||||||||||||||| |||||||||| | |||||||| || |||||||| |||||||| | || | |||||||||||||| ||||| ||| |
|
|
| T |
45033968 |
agatggatcaaaggctacttcaagaagattgaaatgtgtgatgcttttcatgctgaaatgtggggcatgtacctaggtttggacatggcatggagagaaa |
45033869 |
T |
|
| Q |
232 |
attactctcatcttatagtggaaagtga |
259 |
Q |
| |
|
|| | || ||||||||||||| ||||| |
|
|
| T |
45033868 |
ataccacttatcttatagtggagagtga |
45033841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 260
Target Start/End: Original strand, 23949490 - 23949738
Alignment:
| Q |
12 |
atcatctatataggttggaagcggcctcgagagagttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggcggcc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23949490 |
atcatctatataggttggaagcggcctcgagaaggttggatcaagcttaatagtgatggtgcttgcaaggatatgggggttattgctggatgtggcggcc |
23949589 |
T |
|
| Q |
112 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggttt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23949590 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtggggactatatttgggttt |
23949689 |
T |
|
| Q |
212 |
ggacatggcttggagggaacattactctcatcttatagtggaaagtgat |
260 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23949690 |
ggacatggcttggagggaacattaatctcatcttatagtggaaagtgat |
23949738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 5308434 - 5308681
Alignment:
| Q |
12 |
atcatctatataggttggaagcggcctcgagagagttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggcggcc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5308434 |
atcatctatataggttggaagcggcctcgagaaggttggatcaagcttaatagtgatggtgcttgcaaggatatgggggttattgctggatgtggctgcc |
5308533 |
T |
|
| Q |
112 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggttt |
211 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5308534 |
tttttcgtgattcaaacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtggggactatatttgggttt |
5308633 |
T |
|
| Q |
212 |
ggacatggcttggagggaacattactctcatcttatagtggaaagtga |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5308634 |
ggacatggcttggagggaacattactctcatcttatagtggaaagtga |
5308681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 50952975 - 50952726
Alignment:
| Q |
12 |
atcatctatataggttggaagcggcctcgagagagttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggcggcc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50952975 |
atcatctatataggttggaagcggcctcgagaaggttggatcaagcttaatagtgatggtgcttgcaaggatatgggggttattgctggatgtggcggcc |
50952876 |
T |
|
| Q |
112 |
tttttcgtgattcagacggtagatggatcaaaggc-tacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtt |
210 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50952875 |
tttttcgtgattcagacggtagatagatcaaaggcttacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtt |
50952776 |
T |
|
| Q |
211 |
tggacatggcttggagggaacattactctcatcttatagtggaaagtgat |
260 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
50952775 |
tggacatggcttggagggaacattactctaatcttatagtggaaagtgat |
50952726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 23085318 - 23085069
Alignment:
| Q |
12 |
atcatctatataggttggaagcggcctcgagagagttggatcaagcttaatagtgatgatgcttgcaaggatatggggg-ttattgctggatgtggcggc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
23085318 |
atcatctatataggttggaagcggcctcaagaaggttggatcaagcttaatagtgatggtgcttgcaaggatatggggggttattgctggatgaggcggc |
23085219 |
T |
|
| Q |
111 |
ctttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23085218 |
ctttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtggggtctatatttgggtc |
23085119 |
T |
|
| Q |
211 |
tggacatggcttggagggaacattactctcatcttatagtggaaagtgat |
260 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23085118 |
tggacatggcttggagggaacattgctctcatcttatagtggaaagtgat |
23085069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 46 - 259
Target Start/End: Complemental strand, 22065574 - 22065361
Alignment:
| Q |
46 |
gttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggcggcctttttcgtgattcagacggtagatggatcaaagg |
145 |
Q |
| |
|
||||||||||||| || ||||| | ||| |||||||||||||| |||| || ||||| || ||||||||||| |||| |||| |||||| ||||| |
|
|
| T |
22065574 |
gttggatcaagctcaacagtgacggtgcctgcaaggatatgggtcatattttcggttgtggtggtatttttcgtgatgcagatggtaaatggattaaagg |
22065475 |
T |
|
| Q |
146 |
ctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggagggaacattactctcatctt |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||| | || |||||||||||||| |||| ||||||| |
|
|
| T |
22065474 |
ctacactaagaagattggagcttgtgatgccttacatgctgagatttgggggttgtatttgggtatagaaatggcttggagggagcattttgatcatctt |
22065375 |
T |
|
| Q |
246 |
atagtggaaagtga |
259 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
22065374 |
attgtggaaagtga |
22065361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 260
Target Start/End: Original strand, 2601107 - 2601223
Alignment:
| Q |
141 |
aaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggagggaacattactctc |
240 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| ||||||| ||||| ||||| | | ||||||||| | || |||||||||||||| |||| || |
|
|
| T |
2601107 |
aaaggctacactaagtagattggagtttgtgataccttaca---tgagacgtgggagttgtatttgggtatagatatggcttggagggagcattttggtc |
2601203 |
T |
|
| Q |
241 |
atcttatagtggaaagtgat |
260 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2601204 |
gtcttatagtggaaagtgat |
2601223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 259
Target Start/End: Original strand, 6293833 - 6293960
Alignment:
| Q |
132 |
agatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggagggaac |
231 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| || |||||||| |||||||| | || | |||||||||||||| |||||||| |
|
|
| T |
6293833 |
agatggatcaaaggctacttcaagaagattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtaccttggtttggacatggcgtggagggaga |
6293932 |
T |
|
| Q |
232 |
attactctcatcttatagtggaaagtga |
259 |
Q |
| |
|
|| | |||||||||||||||| ||||| |
|
|
| T |
6293933 |
ataccactcatcttatagtggagagtga |
6293960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 259
Target Start/End: Original strand, 16854763 - 16854893
Alignment:
| Q |
129 |
ggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggaggg |
228 |
Q |
| |
|
||||||||||||||||||| | |||||||||||| |||||||| || |||||||| |||||||| | || | |||||||||||||| |||| || |
|
|
| T |
16854763 |
ggtagatggatcaaaggctgcttcaagaagattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtacctaggtttggacatggcgtggatgg |
16854862 |
T |
|
| Q |
229 |
aacattactctcatcttatagtggaaagtga |
259 |
Q |
| |
|
| || | |||||||||||||||| ||||| |
|
|
| T |
16854863 |
agaataccactcatcttatagtggagagtga |
16854893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 259
Target Start/End: Original strand, 28705778 - 28705935
Alignment:
| Q |
102 |
tgtggcggcctttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctat |
201 |
Q |
| |
|
||||| || |||||||| || || || || |||||||||||||||||| |||||||||||| ||||||| || |||| ||| |||||||| | | |
|
|
| T |
28705778 |
tgtggagggctttttcgagactctgaaggcagatggatcaaaggctacttcaagaagattggaatgtgtgatgtttttcatgttgaaatgtggggcatgt |
28705877 |
T |
|
| Q |
202 |
atttgggtttggacatggcttggagggaacattactctcatcttatagtggaaagtga |
259 |
Q |
| |
|
| ||||||||||| |||| |||||||| || | |||||||||||||||| ||||| |
|
|
| T |
28705878 |
acatgggtttggacttggcgtggagggagaataccactcatcttatagtggagagtga |
28705935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 42
Target Start/End: Original strand, 23723079 - 23723109
Alignment:
| Q |
12 |
atcatctatataggttggaagcggcctcgag |
42 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
23723079 |
atcatctatataggttggaagcggcctcgag |
23723109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 260
Target Start/End: Original strand, 13186680 - 13186928
Alignment:
| Q |
12 |
atcatctatataggttggaagcggcctcgagagagttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggcggcc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13186680 |
atcatctatataggttggaagcggcctcgagaaggtttgatcaagcttaatagtgatggtgcttgcaaggatatgggggttattgctggatgtggcggcc |
13186779 |
T |
|
| Q |
112 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggttt |
211 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13186780 |
tttttcgtgatttagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtggggactatatttgggttt |
13186879 |
T |
|
| Q |
212 |
ggacatggcttggagggaacattactctcatcttatagtggaaagtgat |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13186880 |
ggacatggcttggagggaacattactctcatcttatagtggaaagtgat |
13186928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 7305488 - 7305239
Alignment:
| Q |
12 |
atcatctatataggttggaagcggcctcgagagagttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggcggcc |
111 |
Q |
| |
|
||||||||||||| |||| ||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
7305488 |
atcatctatatag-ttggtagcggcctcaagaaggttggatcaagcttaatagtgatggtgcttgcaaggatatgggagttattgctggatgtggtggcc |
7305390 |
T |
|
| Q |
112 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggttt |
211 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7305389 |
tttttcatgattcagacggtagatggatcaaagactacactaaaaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggttt |
7305290 |
T |
|
| Q |
212 |
ggacatggcttgga--gggaacattactctcatcttatagtggaaagtgat |
260 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7305289 |
ggacatgacttggagtgggaacattactctcatcttatagtggaaagtgat |
7305239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 84 - 260
Target Start/End: Complemental strand, 40190754 - 40190578
Alignment:
| Q |
84 |
atgggggttattgctggatgtggcggcctttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatg |
183 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
40190754 |
atgggggttatttctggatgtggcgttctttttcgtgattcagacgttagatggatcaaaggctacattaagaagattggagcttgtgatgccttatatg |
40190655 |
T |
|
| Q |
184 |
ctgagatgtgggggctatatttgggtttggacatggcttggagggaacattactctcatcttatagtggaaagtgat |
260 |
Q |
| |
|
|| ||||||||||||||||||||| || |||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
40190654 |
ctaagatgtgggggctatatttggacttagacatggcttggagcgagcattactctcatcttatagtggaaagtgat |
40190578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 37307626 - 37307445
Alignment:
| Q |
8 |
ggacatcatctatataggttggaagcggcctcgagagagttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggc |
107 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||| |||||| |||||| || | ||||| ||||||||| |||| | |||||||||||||||||||| |
|
|
| T |
37307626 |
ggacatcatctatataagttggaagcggcctcaagaaggttggaccaagctcaaca-tgatggtgcttgcaaagatacgagggttattgctggatgtggc |
37307528 |
T |
|
| Q |
108 |
ggcctttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagat |
190 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
37307527 |
gatctttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttatatgttgagat |
37307445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 114 - 226
Target Start/End: Complemental strand, 26381576 - 26381464
Alignment:
| Q |
114 |
tttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttgg |
213 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||| |||||||||||||||||| || |||||| |||||| ||||||||||||| | | |||||| | |||| |
|
|
| T |
26381576 |
tttcgtgactcagaaggtagatggattaaagactacactaagaagattggtgcgtgtgataacttacaagctgagatgtgggcgttgtatttgagattgg |
26381477 |
T |
|
| Q |
214 |
acatggcttggag |
226 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26381476 |
acatggcttggag |
26381464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 40196797 - 40196712
Alignment:
| Q |
9 |
gacatcatctatataggttggaagcggcctcgagagagttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttat |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| || | || || |||||||||| ||||||| ||||| |
|
|
| T |
40196797 |
gacatcatctatataggttggaagcggcctcgagaaggttggatcaagctcaacaatggtggtgcttgcaagaatatgggtgttat |
40196712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 259
Target Start/End: Complemental strand, 11996025 - 11995898
Alignment:
| Q |
132 |
agatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggagggaac |
231 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| || |||||||| |||||||| | || | |||||||||||||| |||||||| |
|
|
| T |
11996025 |
agatggatcaaaggctacttcaagaagattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtacctaggtttggacatggcgtggagggaga |
11995926 |
T |
|
| Q |
232 |
attactctcatcttatagtggaaagtga |
259 |
Q |
| |
|
|| | |||||||||||||||| ||||| |
|
|
| T |
11995925 |
ataccactcatcttatagtggatagtga |
11995898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 259
Target Start/End: Original strand, 42865734 - 42865861
Alignment:
| Q |
132 |
agatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggagggaac |
231 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| || |||||||| |||||||| | || | |||||||||||||| |||||||| |
|
|
| T |
42865734 |
agatggatcaaaggctacttcaagaagattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtaccttggtttggacatggcgtggagggaga |
42865833 |
T |
|
| Q |
232 |
attactctcatcttatagtggaaagtga |
259 |
Q |
| |
|
|| | |||||||||||||||| ||||| |
|
|
| T |
42865834 |
ataccactcatcttatagtggagagtga |
42865861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 259
Target Start/End: Complemental strand, 24126705 - 24126578
Alignment:
| Q |
132 |
agatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggagggaac |
231 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| || |||||||| |||||||| | || | |||||| ||||||| |||||||| |
|
|
| T |
24126705 |
agatggatcaaaggctacttcaagaagattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtacctaggtttgaacatggcgtggagggaga |
24126606 |
T |
|
| Q |
232 |
attactctcatcttatagtggaaagtga |
259 |
Q |
| |
|
|| | |||||||||||||||| ||||| |
|
|
| T |
24126605 |
ataccactcatcttatagtggagagtga |
24126578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 3733159 - 3733098
Alignment:
| Q |
135 |
tggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggg |
196 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||| ||||||| ||||||||||| |
|
|
| T |
3733159 |
tggatcaaaggctacatgaagaagattggttcttgtgatgctctacatgcggagatgtgggg |
3733098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 260
Target Start/End: Complemental strand, 34390209 - 34389964
Alignment:
| Q |
15 |
atctatataggttggaagcggcctcgagagagttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggcggccttt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34390209 |
atctatataggttggaagcggcctcgagaaggttggatcaagcttaatagtgatggtgcttgcaaggatatgggggttattgctggatgtggcggccttt |
34390110 |
T |
|
| Q |
115 |
ttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttgga |
214 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34390109 |
ttcgtgattcaaacggtagatggatcaaaggctatactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgagtttgga |
34390010 |
T |
|
| Q |
215 |
catggcttggagggaacattactctcatcttatagtggaaagtgat |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34390009 |
catggcttggagggaacattactctcatcttatagtggaaagtgat |
34389964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 36894820 - 36894575
Alignment:
| Q |
16 |
tctatataggttggaagcggcctcgagagagttggatcaagctt-aatagtgatgatgcttgcaaggatatgggggttattgctggatgtggcggccttt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
36894820 |
tctatataggttggaagcggcctcgagaaggttggatcaagctttaataatgatggtgcttgcaaggatatgggggttattgctggatgtggcggctttt |
36894721 |
T |
|
| Q |
115 |
ttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttgga |
214 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36894720 |
ttcatgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttgga |
36894621 |
T |
|
| Q |
215 |
catggcttggagggaacattactctcatcttatagtggaaagtgat |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36894620 |
catggcttggagggaacattactctcatcttatagtggaaagtgat |
36894575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 47598000 - 47597750
Alignment:
| Q |
9 |
gacatcatctatataggttggaagcggcctcgagagagttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggcg |
108 |
Q |
| |
|
||||| ||||| ||||| ||||| || |||| ||| |||||||||| || || || || | ||| |||||||||||||| |||| | || ||||| | |
|
|
| T |
47598000 |
gacattatctacataggatggaaacgacctcaagaaggttggatcaaactcaacagcgacggtgcctgcaaggatatgggtcatatttccggttgtggtg |
47597901 |
T |
|
| Q |
109 |
gcctttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttggg |
208 |
Q |
| |
|
| ||||||||||| |||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
47597900 |
gtatttttcgtgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttggg |
47597801 |
T |
|
| Q |
209 |
tttggacatggcttggagggaacattactctcatcttatagtggaaagtga |
259 |
Q |
| |
|
| | | |||||||| ||||| |||| ||||||||| ||||||||||| |
|
|
| T |
47597800 |
tataaagatggcttgaagggagcattttgatcatcttattgtggaaagtga |
47597750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 111 - 259
Target Start/End: Complemental strand, 43271098 - 43270950
Alignment:
| Q |
111 |
ctttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtt |
210 |
Q |
| |
|
||||||||| ||||||| |||| || ||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||| | ||||| | | |
|
|
| T |
43271098 |
ctttttcgtaattcagatggtaaattgattaaaggctacactaagaagatgtgagcttgtgatgccttacatgctgagatgtatgggttgtatttagata |
43270999 |
T |
|
| Q |
211 |
tggacatggcttggagggaacattactctcatcttatagtggaaagtga |
259 |
Q |
| |
|
| ||||||||||||||||| |||| |||||||||||| ||||||| |
|
|
| T |
43270998 |
tagacatggcttggagggagcatttagatcatcttatagttaaaagtga |
43270950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 259
Target Start/End: Original strand, 1369251 - 1369378
Alignment:
| Q |
132 |
agatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggagggaac |
231 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| || |||||||| |||||||| | || | |||||||||||||| |||||||| |
|
|
| T |
1369251 |
agatggatcaaaggctacttcaagaagattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtaccttggtttggacatggcgtggagggaga |
1369350 |
T |
|
| Q |
232 |
attactctcatcttatagtggaaagtga |
259 |
Q |
| |
|
|| | |||||||||||||||| ||||| |
|
|
| T |
1369351 |
ataccactcatcttatagtggagagtga |
1369378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 259
Target Start/End: Complemental strand, 28945658 - 28945531
Alignment:
| Q |
132 |
agatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggagggaac |
231 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| || |||||||| |||||||| | || | |||||||||||||| |||||||| |
|
|
| T |
28945658 |
agatggatcaaaggctacttcaagaagattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtaccttggtttggacatggcgtggagggaga |
28945559 |
T |
|
| Q |
232 |
attactctcatcttatagtggaaagtga |
259 |
Q |
| |
|
|| | |||||||||||||||| ||||| |
|
|
| T |
28945558 |
ataccactcatcttatagtggagagtga |
28945531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 36859101 - 36859034
Alignment:
| Q |
129 |
ggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggg |
196 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||| || |||||||| |||||||| |
|
|
| T |
36859101 |
ggtagatggatcaaaggctacttcaagaagattggaatgtgtgatgcttttcatgctgaaatgtgggg |
36859034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 159
Target Start/End: Complemental strand, 28561538 - 28561506
Alignment:
| Q |
127 |
acggtagatggatcaaaggctacactaagaaga |
159 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
28561538 |
acggtagatggattaaaggctacactaagaaga |
28561506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 34081145 - 34080897
Alignment:
| Q |
12 |
atcatctatataggttggaagcggcctcgagagagttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggcggcc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34081145 |
atcatctatataggttggaagcggcctcgagaaggttggatcaagcttaatagtgatggtgcttgcaaggatatgggggttattgctggatgtggcggtc |
34081046 |
T |
|
| Q |
112 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggttt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| |
|
|
| T |
34081045 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgataagtgggagctatatttgggttt |
34080946 |
T |
|
| Q |
212 |
ggacatggcttggagggaacattactctcatcttatagtggaaagtgat |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34080945 |
ggacatggcttggagggaacattactctcatcttatagtggaaagtgat |
34080897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 18259545 - 18259298
Alignment:
| Q |
12 |
atcatctatataggttggaagcggcctcgagagagttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggcggcc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
18259545 |
atcatctatataggttggaagcggcctcgagaaggttggatcaagcttaatagtgatagtgcttgcaaggatatgggggttattgttg-atgtggcggcc |
18259447 |
T |
|
| Q |
112 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggttt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
18259446 |
tttttcgtgattcagacggtagatggatcaaagactacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtct |
18259347 |
T |
|
| Q |
212 |
ggacatggcttggagggaacattactctcatcttatagtggaaagtgat |
260 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18259346 |
ggacatggtttggagggaacattactctcatcttatagtggaaagtgat |
18259298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 4560621 - 4560524
Alignment:
| Q |
112 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggt |
209 |
Q |
| |
|
||||||||||| |||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||| |
|
|
| T |
4560621 |
tttttcgtgatgcagatggtaaatggattaaaggctacactaagaagattggagcttgtgatgccttacatactgagatgtgggggttgtatttgggt |
4560524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 141 - 259
Target Start/End: Original strand, 18933974 - 18934092
Alignment:
| Q |
141 |
aaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggagggaacattactctc |
240 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| || | ||||||||| | || ||||||| |||||| |||| || |
|
|
| T |
18933974 |
aaaggctacactaaaaagattggagcttgtgatgccttacatgctgagatgtggaggttgtatttgggtatagagatggcttagagggagcattttgatc |
18934073 |
T |
|
| Q |
241 |
atcttatagtggaaagtga |
259 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
18934074 |
atcttattgtggaaagtga |
18934092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 184
Target Start/End: Original strand, 32216614 - 32216752
Alignment:
| Q |
46 |
gttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggcggcctttttcgtgattcagacggtagatggatcaaagg |
145 |
Q |
| |
|
|||||| ||| |||||||||||||| |||| |||||||| ||| | |||| ||||||||| || ||||||||||| | |||||||||||||| ||||| |
|
|
| T |
32216614 |
gttggagcaaacttaatagtgatgacgcttacaaggataggggagagattgttggatgtgggggtctttttcgtgacttggacggtagatggattaaagg |
32216713 |
T |
|
| Q |
146 |
ctacactaagaagattggagcttgtgatgccttacatgc |
184 |
Q |
| |
|
||||| |||||||||||| | ||| |||||||| |||| |
|
|
| T |
32216714 |
ctacaataagaagattggtgtgtgtcatgccttatatgc |
32216752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 255
Target Start/End: Original strand, 18883272 - 18883416
Alignment:
| Q |
112 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtt- |
210 |
Q |
| |
|
|||||| |||| |||| |||| |||||| ||||||| |||||| ||||||||| ||||||||||||||| || ||||||||||||| | |||||||| | |
|
|
| T |
18883272 |
tttttcatgatgcagatggtaaatggattaaaggctgcactaataagattggaacttgtgatgccttacttgttgagatgtgggggttgtatttggggta |
18883371 |
T |
|
| Q |
211 |
tggacatggcttggagggaacattactctcatcttatagtggaaa |
255 |
Q |
| |
|
| | |||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
18883372 |
taaatatggcttggagggagcattttgatcatcttatagtggaaa |
18883416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 259
Target Start/End: Original strand, 14024752 - 14024879
Alignment:
| Q |
132 |
agatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggagggaac |
231 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| || |||||||| |||||||| | || | |||||||||||||| |||||||| |
|
|
| T |
14024752 |
agatggatcaaaggctacttcaagaagattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtaccttggtttggacatggcgtggagggaga |
14024851 |
T |
|
| Q |
232 |
attactctcatcttatagtggaaagtga |
259 |
Q |
| |
|
|| | |||||||||||||||| ||||| |
|
|
| T |
14024852 |
ataccactcatcttatagtggagagtga |
14024879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 259
Target Start/End: Original strand, 32386305 - 32386432
Alignment:
| Q |
132 |
agatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggagggaac |
231 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| || |||||||| |||||||| | || | |||||||||||||| |||||||| |
|
|
| T |
32386305 |
agatggatcaaaggctacttcaagaagattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtacctaggtttggacatggcatggagggaga |
32386404 |
T |
|
| Q |
232 |
attactctcatcttatagtggaaagtga |
259 |
Q |
| |
|
|| || ||||||||||| |||| ||||| |
|
|
| T |
32386405 |
ataacactcatcttatactggagagtga |
32386432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 260
Target Start/End: Original strand, 22540215 - 22540250
Alignment:
| Q |
225 |
agggaacattactctcatcttatagtggaaagtgat |
260 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22540215 |
agggaacattactctcatcttatagttgaaagtgat |
22540250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 7530773 - 7530834
Alignment:
| Q |
135 |
tggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggg |
196 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||| |||||| ||||||||||| |
|
|
| T |
7530773 |
tggatcaaaggctacatgaagaagattggttcttgtgatgctctacatgtggagatgtgggg |
7530834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 26617131 - 26616883
Alignment:
| Q |
12 |
atcatctatataggttggaagcggcctcgagagagttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggcggcc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
26617131 |
atcatctatataggttggaagcggcctcgagaaggttggatcaagcttaatagtgatggtgcttgcaaggatatgagggttattgcttcatgtggcggcc |
26617032 |
T |
|
| Q |
112 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggttt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
26617031 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatttgggtgctatatttgggttt |
26616932 |
T |
|
| Q |
212 |
ggacatggcttggagggaacattactctcatcttatagtggaaagtgat |
260 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26616931 |
gtacatggcttggagggaacattactctcatcttatagtggaaagtgat |
26616883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 260
Target Start/End: Original strand, 1635790 - 1636038
Alignment:
| Q |
12 |
atcatctatataggttggaagcggcctcgagagagttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggcggcc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1635790 |
atcatctatataggttggaagcggcctcaagaaggttggatcaagcttaatagtgatggtgcttgcaaggatataggggttattgctggatgtggcggcc |
1635889 |
T |
|
| Q |
112 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggttt |
211 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1635890 |
tttttcgtgattcagacggtaaatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtggggactatatttgggttt |
1635989 |
T |
|
| Q |
212 |
ggacatggcttggagggaacattactctcatcttatagtggaaagtgat |
260 |
Q |
| |
|
||| ||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1635990 |
ggatatgacttggagggaatattactctcatcttatagtggaaagtgat |
1636038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 456762 - 456519
Alignment:
| Q |
12 |
atcatctatataggttggaagcggcctcgagagagttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggcggcc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
456762 |
atcatctatataggttggaagcggcctcgagagggttggatcaggcttaatagtgatggtgcttgcaaggatatgggggttattgctggatgtggcggcc |
456663 |
T |
|
| Q |
112 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggttt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||| ||| |
|
|
| T |
456662 |
tttttcgtgattcagacggtagatggatcaaaggctacactaagaagattggagtttgtgatgtcttatatgctgagatgtgggggctatat-----ttt |
456568 |
T |
|
| Q |
212 |
ggacatggcttggagggaacattactctcatcttatagtggaaagtgat |
260 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
456567 |
ggacatggcttggaaggaacattactctcatcttatagtggaaagtgat |
456519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 46 - 259
Target Start/End: Original strand, 44145531 - 44145743
Alignment:
| Q |
46 |
gttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggcggcctttttcgtgattcagacggtagatggatcaaagg |
145 |
Q |
| |
|
||||||||||||| || || || | ||| |||||||||||||| |||| | || ||||| || ||||||||||| |||| |||| |||||| ||||| |
|
|
| T |
44145531 |
gttggatcaagctcaacagcgacggtgcctgcaaggatatgggtcatatttccggttgtggtggtatttttcgtgatgcagatggtaaatggattaaagg |
44145630 |
T |
|
| Q |
146 |
ctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggagggaacattactctcatctt |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| | || |||||||||||||| |||| ||||||| |
|
|
| T |
44145631 |
ctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtatagagatggcttggagggagcattttgatcatctt |
44145730 |
T |
|
| Q |
246 |
atagtggaaagtga |
259 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
44145731 |
at-gtggaaagtga |
44145743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 135 - 258
Target Start/End: Complemental strand, 38560902 - 38560779
Alignment:
| Q |
135 |
tggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggagggaacatt |
234 |
Q |
| |
|
||||| |||||||||||| |||| || |||| ||||||||||||||||| ||||||||||||| | ||||||||| | || |||| ||||||||| |||| |
|
|
| T |
38560902 |
tggattaaaggctacactgagaatatcggagtttgtgatgccttacatgttgagatgtgggggttgtatttgggtatagagatggtttggagggagcatt |
38560803 |
T |
|
| Q |
235 |
actctcatcttatagtggaaagtg |
258 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
38560802 |
ttgatcatcttatagtggaaagtg |
38560779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 259
Target Start/End: Original strand, 33373015 - 33373142
Alignment:
| Q |
132 |
agatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggagggaac |
231 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| || |||||||| |||||||| | || | |||||||||||||| |||||||| |
|
|
| T |
33373015 |
agatggatcaaaggctacttcaagaagattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtacctaggtttggacatggcgtggagggaga |
33373114 |
T |
|
| Q |
232 |
attactctcatcttatagtggaaagtga |
259 |
Q |
| |
|
|| |||||||||||||||| ||||| |
|
|
| T |
33373115 |
atacaactcatcttatagtggagagtga |
33373142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 259
Target Start/End: Original strand, 45093258 - 45093385
Alignment:
| Q |
132 |
agatggatcaaaggctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggagggaac |
231 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| |||||||| || |||||||| |||||||| | || | |||||||||||||| |||||||| |
|
|
| T |
45093258 |
agatggattaaaggctacttcaagaagattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtacctaggtttggacatggcgtggagggaga |
45093357 |
T |
|
| Q |
232 |
attactctcatcttatagtggaaagtga |
259 |
Q |
| |
|
|| | |||||||||||||||| ||||| |
|
|
| T |
45093358 |
ataccactcatcttatagtggatagtga |
45093385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 20670344 - 20670285
Alignment:
| Q |
167 |
ttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggag |
226 |
Q |
| |
|
||||||||| ||||||||||||||||||| || |||||||| || || ||||||||||| |
|
|
| T |
20670344 |
ttgtgatgctctacatgctgagatgtggggtctttatttggggtttgatatggcttggag |
20670285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 40536626 - 40536559
Alignment:
| Q |
159 |
attggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggag |
226 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||| || |||||||| | || ||||||||||| |
|
|
| T |
40536626 |
attggagcttgtgatgctctgcatgctgagatgtggggtctttatttgggactagatatggcttggag |
40536559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 46 - 259
Target Start/End: Complemental strand, 1223335 - 1223122
Alignment:
| Q |
46 |
gttggatcaagcttaatagtgatgatgcttgcaaggatatgggggttattgctggatgtggcggcctttttcgtgattcagacggtagatggatcaaagg |
145 |
Q |
| |
|
||||||||||||| || || || | ||| |||||||||||||| |||| | | ||||| || |||||||||| || | |||| |||||| ||||| |
|
|
| T |
1223335 |
gttggatcaagctcaacagcgacggtgcctgcaaggatatgggtcatatttccgattgtggtggtatttttcgtgacgcatatggtaaatggattaaagg |
1223236 |
T |
|
| Q |
146 |
ctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggctatatttgggtttggacatggcttggagggaacattactctcatctt |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| | || |||||||||||||| |||| ||||||| |
|
|
| T |
1223235 |
ctacactaagaagattggagcttgtgatgccttacatgctgagatgtgggggttgtatttgggtatagagatggcttggagggagcattttgatcatctt |
1223136 |
T |
|
| Q |
246 |
atagtggaaagtga |
259 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
1223135 |
attgtggaaagtga |
1223122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University