View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17894_low_26 (Length: 256)
Name: NF17894_low_26
Description: NF17894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17894_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 34655997 - 34655750
Alignment:
| Q |
1 |
tcaaatcgtcttttggtgtaataaaatgcaacgttgacgcaacaattttccacaataatacaattgttggatacggaatcttttttcgaaattcagaggg |
100 |
Q |
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|||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||| |
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| T |
34655997 |
tcaaatcgtcttccggtgtgataaaatgcaacattgacgcaacaattttccacaataatataattgttggatataaaatctgttttcgaaattcagaggg |
34655898 |
T |
|
| Q |
101 |
gcaactcttaatggcaaaatttgcgttttttccatcctcgatgactgttttagaagctgaagctactgcattgtcggaggcgataaaattggcagtctct |
200 |
Q |
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|
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34655897 |
gcaactcttaatgacaaaatctgcgttttttccatcctcgatgactgttttagaagctgaagctactgcattgtcggaggcgataaaattggcagtctct |
34655798 |
T |
|
| Q |
201 |
ttggaattccaaactgtccgctttgaaacagattgtatgacctttgct |
248 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34655797 |
ttgggattccaaactgtccgctttgaaacagattgtatgacccttgct |
34655750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 248
Target Start/End: Complemental strand, 16927690 - 16927463
Alignment:
| Q |
21 |
ataaaatgcaacgttgacgcaacaattttccacaataatacaattgttggatacggaatcttttttcgaaattcagaggggcaactcttaatggcaaaat |
120 |
Q |
| |
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||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
16927690 |
ataaaatgcaacgttgacgcagcaattttccaccataatacaattgttggatatggaatctgttttcgaaattctgaggggcaactcttaatggcaaaat |
16927591 |
T |
|
| Q |
121 |
ttgcgttttttccatcctcgatgactgttttagaagctgaagctactgcattgtcggaggcgataaaattggcagtctctttggaattccaaactgtccg |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
16927590 |
ctgcgttttttccatcctcgatgactgttttagaagctgaagctactgcattgtcagaggcgataaaattggcagtctctttgggattccaaactgtccg |
16927491 |
T |
|
| Q |
221 |
ctttgaaacagattgtatgacctttgct |
248 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |
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| T |
16927490 |
ctttgaaacagattgtataacccttgct |
16927463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 52964552 - 52964321
Alignment:
| Q |
15 |
ggtgtaataaaatgcaacgttgacgcaacaattttccacaataatacaattgttggatacggaatcttttttcgaaattcagaggggcaactcttaatgg |
114 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||| |
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| T |
52964552 |
ggtgtgataaaatgcaacgttgacacaacaattttccacgataatacaattgttggat--ggaatctgttttcgaaattatgaggggcaactcttaatgg |
52964455 |
T |
|
| Q |
115 |
caaaatttgcgttttttccatcctcgatgactgttttagaagctgaagctactgcattgtcggaggcgataaaattggcagtctctttggaattccaaac |
214 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
52964454 |
taaaatctgtgttttttccatcctcgatgattgttttagaagttgaagctactgcattgtcggaggcgataaaattggcagtctctttgggattccaaac |
52964355 |
T |
|
| Q |
215 |
tgtccgctttgaaacagattgtatgacctttgct |
248 |
Q |
| |
|
||||| |||||||| ||||||||||||| ||||| |
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| T |
52964354 |
tgtccactttgaaatagattgtatgacccttgct |
52964321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 10813549 - 10813316
Alignment:
| Q |
15 |
ggtgtaataaaatgcaacgttgacgcaacaattttccacaataatacaattgttggatacggaatcttttttcgaaattcagaggggcaactcttaatgg |
114 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||| |
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| T |
10813549 |
ggtgtgataaaatgcaacgttgacgcagcaattttccaccataatacaattgttggatatggaatctgttttcgaaattcggaggggcaactcttaatgg |
10813450 |
T |
|
| Q |
115 |
caaaatttgcgttttttccatcctcgatgactgttttagaagctgaagctactgcattgtcggaggcgataaaattggcagtctctttggaattccaaac |
214 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| |
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| T |
10813449 |
caaaatctgcattttttccatcctcgatgactgtttttgaagctgaagctactgcattgtcggaggcgataaaattggcattctctttgggatttcaaac |
10813350 |
T |
|
| Q |
215 |
tgtccgctttgaaacagattgtatgacctttgct |
248 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| |
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| T |
10813349 |
tgtccgctttgaaacagattgtatggcccttgct |
10813316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 51492165 - 51491945
Alignment:
| Q |
21 |
ataaaatgcaacgttgacgcaacaattttccacaataatacaattgttggatacggaatcttttttcgaaattcagaggggcaactcttaatggcaaaat |
120 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||| ||||||||||||||||||| |
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| T |
51492165 |
ataaaatgcaacgttgacgcatcaattttccacaataatacaattgttggatatggaatctgttttcgaaattcttaggc-caactcttaatggcaaaat |
51492067 |
T |
|
| Q |
121 |
ttgcgttttttccatcctcgatgactgttttagaagctgaagctactgcattgtcggaggcgataaaattggcagtctctttggaattccaaactgtccg |
220 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51492066 |
ctgcgttttttccatcctcgatgactgttttagaagttgaagctactgcattgtcggaggcgataaaattggcagtctctttgggattccaaactgtcca |
51491967 |
T |
|
| Q |
221 |
ctttgaaacagattgtatgacc |
242 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
51491966 |
atttgaaacagattgtatgacc |
51491945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 5185883 - 5185651
Alignment:
| Q |
15 |
ggtgtaataaaatgcaacgttgacgcaacaattttccacaataatacaattgttggatacggaatcttttttcgaaattcagaggggcaactcttaatgg |
114 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| | ||||| ||||| |||||| |||||| |||||||||| | |
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|
| T |
5185883 |
ggtgtgataaaatgcaacgttgacgcagcaattttccaccataat-caattgttggatatgaaatctgttttcaaaattcggaggggaaactcttaattg |
5185785 |
T |
|
| Q |
115 |
caaaatttgcgttttttccatcctcgatgactgttttagaagctgaagctactgcattgtcggaggcgataaaattggcagtctctttggaattccaaac |
214 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| |
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|
| T |
5185784 |
caaaatctgcattttttccatcctcgatgactgttttagaagctgaagctactgcattgtcggaggcgataaaattggcaatctctttgggatttcaaac |
5185685 |
T |
|
| Q |
215 |
tgtccgctttgaaacagattgtatgacctttgct |
248 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
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|
| T |
5185684 |
tgtccgctttgaaacagattgtatgacccttgct |
5185651 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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