View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17894_low_27 (Length: 254)
Name: NF17894_low_27
Description: NF17894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17894_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 2462131 - 2461929
Alignment:
| Q |
20 |
ccaccccatgcgtgattcgcgacaatgtaataacagagcagttaagaagattctgtgtctccatcacgtcaatgttcctccatttctgggacaaaattta |
119 |
Q |
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| T |
2462131 |
ccaccccatgcgtgattcgcgacaatgtaataacagagcagttaagaagattctgtgtctccatcacgtcaatgttcctccatttctgggacaaaattta |
2462032 |
T |
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| Q |
120 |
ttggcaccccattgggatactgttgcatcaccaaaacagatgctgttgtccgaaaatcttgtgatgccaataagccaccaacaggtcctaattccgggca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462031 |
ttggcaccccattgggatactgttgcatcaccaaaacagatgctgttgtccgaaaatcttgtgatgccaataagccaccaacaggtcctaattccgggca |
2461932 |
T |
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| Q |
220 |
ctc |
222 |
Q |
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||| |
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| T |
2461931 |
ctc |
2461929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 2451121 - 2450919
Alignment:
| Q |
20 |
ccaccccatgcgtgattcgcgacaatgtaataacagagcagttaagaagattctgtgtctccatcacgtcaatgttcctccatttctgggacaaaattta |
119 |
Q |
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|||||||||||| |||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
2451121 |
ccaccccatgcgcgattcgggacaatgtaaaaacagagcagttaagaagattccgtgtctccatcacgtgaatgttcctccatttctgggacaaagttta |
2451022 |
T |
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| Q |
120 |
ttggcaccccattgggatactgttgcatcaccaaaacagatgctgttgtccgaaaatcttgtgatgccaataagccaccaacaggtcctaattccgggca |
219 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
2451021 |
ttggcaccccattgtgatactgttgcatcaccaaaacagatgctgttgtgcggaaatcttgtgatgccaacaagccaccaacaggtcctaattctgggca |
2450922 |
T |
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| Q |
220 |
ctc |
222 |
Q |
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||| |
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| T |
2450921 |
ctc |
2450919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 90 - 223
Target Start/End: Complemental strand, 2446284 - 2446151
Alignment:
| Q |
90 |
aatgttcctccatttctgggacaaaatttattggcaccccattgggatactgttgcatcaccaaaacagatgctgttgtccgaaaatcttgtgatgccaa |
189 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||| | ||||||| ||| ||| |
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| T |
2446284 |
aatgttcctccatttctgggacaaaattcattggcaccccattatgatactgttgcatcaccaaaaccgatgctgttgtggggcaatcttgggatatcaa |
2446185 |
T |
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| Q |
190 |
taagccaccaacaggtcctaattccgggcactcc |
223 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
2446184 |
caagccaccaacaggtcctagttccgggcactcc |
2446151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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