View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17894_low_34 (Length: 233)
Name: NF17894_low_34
Description: NF17894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17894_low_34 |
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| [»] scaffold0164 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 18809598 - 18809391
Alignment:
| Q |
1 |
gtatccatgcatgttcatctctcttctcccatcctcattttctgatgattaacaggcttccaatttcactttagtgtctgtatgtgtgacaattagttta |
100 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18809598 |
gtatccatgcatgttcatctctcttctctcatcctcattttctgatgattaacaggcttccaatttcactttagtgtctgtatgtgtgacaattagttta |
18809499 |
T |
|
| Q |
101 |
tagnnnnnnnnaagggatcaattacatgtttctctagtaagtggttatctatgacctgttcgctatattatacttgttaaatccactcaaagtaagggag |
200 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
18809498 |
tagttttttttaagggatcaattacatgtttctctagtaagtggttatctatgacatgttcactatattatacttgttaaatccactcaaagtaagggag |
18809399 |
T |
|
| Q |
201 |
ataatcaa |
208 |
Q |
| |
|
|||||||| |
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|
| T |
18809398 |
ataatcaa |
18809391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 16838 - 16632
Alignment:
| Q |
1 |
gtatccatgcatgttcatctctcttctcccatcctcattttctgatgattaacaggcttccaatttcactttagtgtctgtatgtgtgacaattagttta |
100 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16838 |
gtatccatgcatgtttatctctcttctctcatcctccttttctgatgattaacaggcttccaatttcactttagtgtctgtatgtatgacaattagttta |
16739 |
T |
|
| Q |
101 |
tagnnnnnnnnaagggatcaattacatgtttctctagtaagtggttatctatgacctgttcgctatattatacttgttaaatccactcaaagtaagggag |
200 |
Q |
| |
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||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
16738 |
tagtttttttgaagggatcaattacatgtttctttagtaagtggttatctatgacctgttcgctatgttatacttgttaaatccacccaaagtaagggag |
16639 |
T |
|
| Q |
201 |
ataatca |
207 |
Q |
| |
|
||||||| |
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|
| T |
16638 |
ataatca |
16632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 18566353 - 18566145
Alignment:
| Q |
1 |
gtatccatgcatgttcatctctcttctcccatcctcattttctgatgattaacaggcttccaatttcactttagtgtctgtatgtgtgacaattagttta |
100 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18566353 |
gtatccatgcatgtttatctctcttctctcatcctcattttctgatgattaacaggcttccaatttcactttagtgtctgtatgtgtgacaattagttta |
18566254 |
T |
|
| Q |
101 |
tagnnnnnnnnaagggatcaattacatgtttctctagtaagtggttatctatgacctgttcgctatattatacttgttaaatccactcaaagtaagggag |
200 |
Q |
| |
|
||| ||||||||| |||||||| ||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
18566253 |
tagtttttttgaagggatcatttacatgtctctctagtaagtggttatcaatgacctattcgctatgttatacttgttaaatccacccaaagtaagggag |
18566154 |
T |
|
| Q |
201 |
ataatcaaa |
209 |
Q |
| |
|
||||||||| |
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|
| T |
18566153 |
ataatcaaa |
18566145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 44482864 - 44483074
Alignment:
| Q |
1 |
gtatccatgcatgttcatctctcttctcccatcctcattttctgatgattaacaggcttccaatttcactttagtgtctgtatgtgtgacaattagttta |
100 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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|
| T |
44482864 |
gtatccatgcatgtttatctctcttctctcatcctcattttctgatgattaacaggcttccaatttcactttagtgtatgtatgtgtgccaattagttta |
44482963 |
T |
|
| Q |
101 |
tag--nnnnnnnnaagggatcaattacatgtttctctagtaagtggttatctatgacctgttcgctatattatacttgttaaatccactcaaagtaaggg |
198 |
Q |
| |
|
||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
44482964 |
tagtttttttttgaagggatcatttacatgtttctctagtaagtggttatttatgacctgttcgctatgttatacttgttaaatccacccaaagtaaggg |
44483063 |
T |
|
| Q |
199 |
agataatcaaa |
209 |
Q |
| |
|
||||||||||| |
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|
| T |
44483064 |
agataatcaaa |
44483074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 24072378 - 24072172
Alignment:
| Q |
1 |
gtatccatgcatgttcatctctcttctcccatcctcattttctgatgattaacaggcttccaatttcactttagtgtctgtatgtgtgacaattagttta |
100 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||| ||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
24072378 |
gtatccatgcatgtttatctctcttctctcatcctccttttctgatgattaacacgctttcaatttcactttagtgtatgtatgtgtgacaattagttta |
24072279 |
T |
|
| Q |
101 |
tagnnnnnnnnaagggatcaattacatgtttctctagtaagtggttatctatgacctgttcgctatattatacttgttaaatccactcaaagtaagggag |
200 |
Q |
| |
|
||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||| |
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| T |
24072278 |
tagtttttttgaagggatcaattacatgtttcttcagtaagtggttatctatgacctgtttgctatgttatacttgttaaatccacccaaagtaagggag |
24072179 |
T |
|
| Q |
201 |
ataatca |
207 |
Q |
| |
|
||||||| |
|
|
| T |
24072178 |
ataatca |
24072172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 19834260 - 19834056
Alignment:
| Q |
1 |
gtatccatgcatgttcatctctcttctcccatcctcattttctgatgattaacaggcttccaatttcactttagtgtctgtatgtgtgacaattagttta |
100 |
Q |
| |
|
||||||||||| ||| |||||||||||| ||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19834260 |
gtatccatgcaagtttatctctcttctctcatcctccttttctgatgattagcaggattccaatttcactttagtgtctgtatgtgtgacaattagttta |
19834161 |
T |
|
| Q |
101 |
tagnnnnnnnnaagggatcaattacatgtttctctagtaagtggttatctatgacctgttcgctatattatacttgttaaatccactcaaagtaagggag |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||| |||||||||||| |
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|
| T |
19834160 |
tagtttttttgaagggatcaattacatgtttctctagtaagtggttatctatgatctgttcactatgttatacttgttaaatccacccaaagtaagggaa |
19834061 |
T |
|
| Q |
201 |
ataat |
205 |
Q |
| |
|
||||| |
|
|
| T |
19834060 |
ataat |
19834056 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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