View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17894_low_39 (Length: 206)
Name: NF17894_low_39
Description: NF17894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17894_low_39 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 82; Significance: 6e-39; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 1029091 - 1029243
Alignment:
| Q |
18 |
aagaatttgaaaacaaaatgctt-gatgtttataagattcacatgttgtgtttgttaaatttctttcgagaaaagcggattttggtttggaagtaaaatt |
116 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||| | || |||||||||||| |||||||| |
|
|
| T |
1029091 |
aagaatttgaaaacaaaatgctttgatgtttataagattcacgtgttgtgtttgttaattttctttcgagaagaatggcttttggtttggaggtaaaatt |
1029190 |
T |
|
| Q |
117 |
atttcaggttgtttg-aatatatattacgttataagtatggtttggaatggtgc |
169 |
Q |
| |
|
|||||||||||| | |||||||||||||| | ||| |||| |||||||||||| |
|
|
| T |
1029191 |
atttcaggttgtccgaaatatatattacgtgaaaag-atgggttggaatggtgc |
1029243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 1011786 - 1011937
Alignment:
| Q |
18 |
aagaatttgaaaacaaaatgcttgatgtttataagattcacatgttgtgtttgttaaatttctttcgagaaaagcggattttggtttggaagtaaaatta |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||| | || |||||||||||| ||||||||| |
|
|
| T |
1011786 |
aagaatttgaaaacgaaatgcttgatgtttataagattcacgtgttgtgttttttaaatttctttcgagaagaatggcttttggtttggaggtaaaatta |
1011885 |
T |
|
| Q |
118 |
tttcaggttgtttg-aatatatattacgttataagtatggtttggaatggtgc |
169 |
Q |
| |
|
||||| ||| | || |||||||||||||| | ||| |||| |||||||||||| |
|
|
| T |
1011886 |
tttcatgttatctgaaatatatattacgtgaaaag-atgggttggaatggtgc |
1011937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 991404 - 991491
Alignment:
| Q |
96 |
ttttggtttggaagtaaaattatttcaggttgtttgaatatatattacgttataagtatggtttggaatggtgcattttgcagtgttgga |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
991404 |
ttttggtttggaagtaaaattatttcaggttgtttgaatatatatta-gtta-aagtatggtttggaatggtgcattttgcagcgttgga |
991491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University