View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17894_low_6 (Length: 528)
Name: NF17894_low_6
Description: NF17894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17894_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 6 - 432
Target Start/End: Original strand, 32083789 - 32084215
Alignment:
| Q |
6 |
acaaccttgtttgtaaaaaacggaactgtcatgattctgcgcattttacgccaatgttcgccgtagactgtgaacaccatgtcttgtcctttacctgtga |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32083789 |
acaaccttgtttgtaaaaaacggaactgtcatgattctgcgcattttacgccaatgttcgccgtagactgtgaacaccatgtcttgtcctttaccagtga |
32083888 |
T |
|
| Q |
106 |
agatatcgaaaactacgttacgtgtacgtgatccgaattcaacaccttgtgtgtggaggacttctttggcgagttctggggaagaaactaccacgaggtt |
205 |
Q |
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| T |
32083889 |
agatatcgaaaactacgttacgtgtacgtgatccgaattcaacaccttgtgtgtggaggacttctttggcgagttctggggaagaaactaccacgaggtt |
32083988 |
T |
|
| Q |
206 |
acgttggcccatacgtaggaggaacatgtcgccgaagcgtttggcgtaatcggtgaggttacggtggttgagatcatctccgacttgaagccagttaccg |
305 |
Q |
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| T |
32083989 |
acgttggcccatacgtaggaggaacatttcgccgaagcgtttggcgtaatcggtgaggttacggtggttgagatcatctccgacttgaagccagttaccg |
32084088 |
T |
|
| Q |
306 |
aagatagggactgggattggacctggtgggagtttgaagcgtttgccacggagttttgagattgtgatggcgattgtggcggcaatgaagagggctaaaa |
405 |
Q |
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| T |
32084089 |
aagatagggactgggattggacctggtgggagtttgaagcgtttgccacggagttttgagattgtgatggcgattgtggcggcaatgaagagggctaaaa |
32084188 |
T |
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| Q |
406 |
gggtcttttcaaggaggagaagatcca |
432 |
Q |
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| T |
32084189 |
gggtcttttcaaggaggagaagatcca |
32084215 |
T |
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Back To:
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Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 245 - 432
Target Start/End: Complemental strand, 16117813 - 16117614
Alignment:
| Q |
245 |
tttggcgtaatcggtgaggttacggtggttgagatcatctccgacttgaagccagttaccgaagata------------gggactgggattggacctggt |
332 |
Q |
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| T |
16117813 |
tttggcgtaattggtgagattacggtggttgagatcatctccgacttgaagcaagttaccgaagatatatatatatatagggactgggaatggacctggt |
16117714 |
T |
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| Q |
333 |
gggagtttgaagcgtttgccacggagttttgagattgtgatggcgattgtggcggcaatgaagagggctaaaagggtcttttcaaggaggagaagatcca |
432 |
Q |
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| T |
16117713 |
gggagtttgaagcttttgccacaaattattgagattatgatggctattgtggcggcgatgaagagggctaaaagggtctttcgaaggaggagaaggtcca |
16117614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 156
Target Start/End: Complemental strand, 50240537 - 50240387
Alignment:
| Q |
6 |
acaaccttgtttgtaaaaaacggaactgtcatgattctgcgcattttacgccaatgttcgccgtagactgtgaacaccatgtcttgtcctttacctgtga |
105 |
Q |
| |
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||||| ||||| || ||||| || | |||||||||||| |||||||| |||||||| || || ||||| ||||| |||||||||||||| ||||| |||| |
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| T |
50240537 |
acaactttgttagtgaaaaatggcaatgtcatgattcttcgcattttgcgccaatgatcaccatagacagtgaaaaccatgtcttgtccattaccagtga |
50240438 |
T |
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| Q |
106 |
agatatcgaaaactacgttacgtgtacgtgatccgaattcaacaccttgtg |
156 |
Q |
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| T |
50240437 |
agatgtcaaagacaacgttacgaggacgagaaccaaactcgacaccttgtg |
50240387 |
T |
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