View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17894_low_7 (Length: 513)

Name: NF17894_low_7
Description: NF17894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17894_low_7
NF17894_low_7
[»] chr1 (6 HSPs)
chr1 (88-505)||(48591668-48592086)
chr1 (88-505)||(48601363-48601781)
chr1 (29-332)||(48597189-48597484)
chr1 (83-128)||(26532768-26532813)
chr1 (83-128)||(15882690-15882735)
chr1 (81-125)||(49197444-49197488)
[»] chr4 (2 HSPs)
chr4 (327-505)||(23232246-23232421)
chr4 (454-505)||(23224913-23224964)


Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 88 - 505
Target Start/End: Original strand, 48591668 - 48592086
Alignment:
Q  88 taaatagtagaaaataaataaataattttgattggtgtcaaattacgt--ataactctactcactttattgataggtaaataagagttatcatttcttta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  48591668 taaatagtagaaaataaataaataattttgattggtgtcaaatcacgtgtataactctactcactttattgataggtaaataagagttgtcatttcttta 48591767  T
Q  186 cttggtgccaaagtgtatatttttgttatacgattcactatcgnnnnnnncggtagggtatactttgaaaagttattaacagttatccaaaatataacgc 285  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  48591768 cttggtgccaaagtgtatatttttgttatacgattcactatcgaaaaaa-cggtagggcatactttgaaaagttattaacagttatccaaaatataaggc 48591866  T
Q  286 catgcatataagtttgattcacaacacttctcaattgtgcattcaaaacgaataaaccaatatgatttcccattccttctcattagctatgattttgctc 385  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48591867 catgcatataagtttgaatcacaacacttctcaattgtgcattcaaagtgaataaaccaatatgatttcccattccttctcattagctatgattttgctc 48591966  T
Q  386 ctatttcttttcatttttcagcttctctcttacttaaagagaaacaagaagtcgcatgcacgattaccacctcaccctccaagtccaccagcaataccaa 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48591967 ctatttcttttcatttttcagcttctctcttacttaaagagaaacaagaagttgcatgcacgattaccacctcaccctccaagtccaccagcaataccaa 48592066  T
Q  486 taattggacatcttcatctc 505  Q
    ||||||||||||||||||||    
T  48592067 taattggacatcttcatctc 48592086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 88 - 505
Target Start/End: Original strand, 48601363 - 48601781
Alignment:
Q  88 taaatagtagaaaataaataaataattttgattggtgtcaaattacgt--ataactctactcactttattgataggtaaataagagttatcatttcttta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  48601363 taaatagtagaaaataaataaataattttgattggtgtcaaatcacgtgtataactctactcactttattgataggtaaataagagttgtcatttcttta 48601462  T
Q  186 cttggtgccaaagtgtatatttttgttatacgattcactatcgnnnnnnncggtagggtatactttgaaaagttattaacagttatccaaaatataacgc 285  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  48601463 cttggtgccaaagtgtatatttttgttatacgattcactatcgaaaaaa-cggtagggcatactttgaaaagttattaacagttatccaaaatataaggc 48601561  T
Q  286 catgcatataagtttgattcacaacacttctcaattgtgcattcaaaacgaataaaccaatatgatttcccattccttctcattagctatgattttgctc 385  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48601562 catgcatataagtttgaatcacaacacttctcaattgtgcattcaaagtgaataaaccaatatgatttcccattccttctcattagctatgattttgctc 48601661  T
Q  386 ctatttcttttcatttttcagcttctctcttacttaaagagaaacaagaagtcgcatgcacgattaccacctcaccctccaagtccaccagcaataccaa 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48601662 ctatttcttttcatttttcagcttctctcttacttaaagagaaacaagaagttgcatgcacgattaccacctcaccctccaagtccaccagcaataccaa 48601761  T
Q  486 taattggacatcttcatctc 505  Q
    ||||||||||||||||||||    
T  48601762 taattggacatcttcatctc 48601781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 29 - 332
Target Start/End: Original strand, 48597189 - 48597484
Alignment:
Q  29 ttaccaatgtaatcaaagttatttatttatcttttaccatgtatgtcatatctataacataaatagtagaaaataaataaataattttgattggtgtcaa 128  Q
    ||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48597189 ttaccaatgtaatcaaaattatttatttatcttttatcttgtatgtcatatctataacataaatagtagaaaataaataaataaatttgattggtgtcaa 48597288  T
Q  129 attac--gtataactctactcactttattgataggtaaataagagttatcatttctttacttggtgccaaagtgtatatttttgttatacgattcactat 226  Q
    || ||  |||||||||||||||||||||||         |||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48597289 atcacgtgtataactctactcactttattg---------taagagatgtcatttctttacttggtgccaaagtgtatatttttgttatacaattcactat 48597379  T
Q  227 cgnnnnnnncggtagggtatactttgaaaagttattaacagttatccaaaatataacgccatgcatataagtttgattcacaacacttctcaattgtgca 326  Q
    ||       |||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48597380 cg-aaaaaacggtagggcatactttgaaaatttattaacggttatccaaaatataacgccatgcatataagtttgattcacaacacttctcaattgtgca 48597478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 26532813 - 26532768
Alignment:
Q  83 taacataaatagtagaaaataaataaataattttgattggtgtcaa 128  Q
    |||||||| |||||||| | ||||||||||||||||||||||||||    
T  26532813 taacataagtagtagaagacaaataaataattttgattggtgtcaa 26532768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 15882690 - 15882735
Alignment:
Q  83 taacataaatagtagaaaataaataaataattttgattggtgtcaa 128  Q
    ||||||||||| ||||| | |||||||| |||||||||||||||||    
T  15882690 taacataaataatagaagacaaataaatgattttgattggtgtcaa 15882735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 49197444 - 49197488
Alignment:
Q  81 tataacataaatagtagaaaataaataaataattttgattggtgt 125  Q
    ||||||||||||||| ||| ||||||| || ||||||||||||||    
T  49197444 tataacataaatagtggaagataaatatatgattttgattggtgt 49197488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 327 - 505
Target Start/End: Complemental strand, 23232421 - 23232246
Alignment:
Q  327 ttcaaaacgaataaaccaatatgatttcccattccttctcattagctatgattttgctcctatttcttttcatttttcagcttctctcttacttaaagag 426  Q
    |||||| | |||||| ||| |||||||| |||||||||| ||||||||||||| |||||||  |||||||| || | |  ||| ||||   ||| |||||    
T  23232421 ttcaaagctaataaaacaagatgatttctcattccttcttattagctatgattgtgctccttcttcttttccttctcccacttttctccgtctttaagag 23232322  T
Q  427 aaacaagaagtcgcatgcacgattaccacctcaccctccaagtccaccagcaataccaataattggacatcttcatctc 505  Q
    ||||||||| || ||  |||  ||||| ||||  ||||||||||||||| |||||||||||||||||||||||||||||    
T  23232321 aaacaagaaatcacaaccacatttacc-cctc--cctccaagtccaccaacaataccaataattggacatcttcatctc 23232246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 454 - 505
Target Start/End: Complemental strand, 23224964 - 23224913
Alignment:
Q  454 acctcaccctccaagtccaccagcaataccaataattggacatcttcatctc 505  Q
    |||| ||||||||||||||| |||||||||||||||||| ||||||||||||    
T  23224964 accttaccctccaagtccactagcaataccaataattggtcatcttcatctc 23224913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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