View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17894_low_8 (Length: 510)
Name: NF17894_low_8
Description: NF17894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17894_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 8e-90; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 238 - 480
Target Start/End: Original strand, 30904249 - 30904494
Alignment:
| Q |
238 |
ctcttacagatttttgatgatgctaataagtgagatacacatttaagttagaattttaatttttactaaacaaatttaaataagataaaatcatgtaaaa |
337 |
Q |
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| T |
30904249 |
ctcttgcagattttttatgatgctaataagtgagatacacatttaagttagaattttaatttttactaaacaaatgtatataagataaaatcatgtaaaa |
30904348 |
T |
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| Q |
338 |
tggatcatccatttccaaacctttaatatattagcat---ttgatatcatgtataaataattccagcatattgtagatatcttagttggtgattattggc |
434 |
Q |
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| T |
30904349 |
tggatcatccatttccaaacctttaatatattggcatcacttgatatcatgtataaatagtttcagcatattgtagatatattaattggtgattattggc |
30904448 |
T |
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| Q |
435 |
tcaacaatgacttacaaaccatatttttgaatgaaatatatatgca |
480 |
Q |
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| T |
30904449 |
acaacaatgacctacaaactatatccatgaatgaaatatacatgca |
30904494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 34 - 135
Target Start/End: Original strand, 30904053 - 30904154
Alignment:
| Q |
34 |
ttgtttatatgtgaatctaaattaaataaataaaatgacagacatgcacaaaattgaaaagcaagtgccaaataatcacttcatttaatattgtgaattt |
133 |
Q |
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| T |
30904053 |
ttgtttatatgtgaatctaaattaaataaataaaatcacagacatgcacaaaattgaaaagcaagtgccaaataatcacttcatttaatattgtgaattt |
30904152 |
T |
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| Q |
134 |
ta |
135 |
Q |
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| T |
30904153 |
ta |
30904154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 30904148 - 30904231
Alignment:
| Q |
168 |
aattttattaagaaaaactaattttgaattttgtttttggctctactcatacata-actcaaatgtaacatctcttacagattt |
250 |
Q |
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| T |
30904148 |
aattttattaagaaaaactaattttgaattttgtttttggctctactcatacatatactcaaatgaaacaactcttgcagattt |
30904231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 34 - 369
Target Start/End: Original strand, 30897077 - 30897415
Alignment:
| Q |
34 |
ttgtttatatgtgaatctaaattaaataaa-taaaatgacagacatgcacaaaattgaaaagcaagtgccaaa-----taatcacttcatttaatattgt |
127 |
Q |
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| T |
30897077 |
ttgtttatacgtgaatctaaagtaaataaaatgaaat---agacatgcacaaaattgaaaaacaatatccaaaataaataatcacttcatttaatatt-t |
30897172 |
T |
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| Q |
128 |
gaattttagcca-ttgatttctcttatactggttt-ttaaccaattttattaagaaaaactaattttg---aattttgtttttggctct--actcataca |
220 |
Q |
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| T |
30897173 |
gaattttagcaatttgttttctcttattttgatttcttaaacaattttgttacgaaaagctaattttgaaaaagattaaaattggctctgcacacataca |
30897272 |
T |
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| Q |
221 |
taactcaaatgtaaca--tctcttacagatttttgatgatgctaataagtgagatacacatttaagttagaattttaatttttactaaacaaatttaaat |
318 |
Q |
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| T |
30897273 |
t-actccaatg-aacaactctgttatagttttttgatgatgctaataagtgagatacaaatttaagtttgattttt--ttt----tcaacaaatgaaaat |
30897364 |
T |
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| Q |
319 |
aagataaaatcatgtaaaatggatcatccatttccaaacctttaatatatt |
369 |
Q |
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| T |
30897365 |
aagattaaatcatataaaatatagcattcatttccaaacctttaatatatt |
30897415 |
T |
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