View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17895_high_1 (Length: 651)
Name: NF17895_high_1
Description: NF17895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17895_high_1 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 220 - 651
Target Start/End: Complemental strand, 32616623 - 32616184
Alignment:
| Q |
220 |
ttagtgaatatgtcaagttattgagtaaaggaataagggaaatacttgatgagtttcatgagaagaagattttgagcttcctgctttactagaatttgag |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32616623 |
ttagtgaatatgtcaagttattgagtaaaggaataagggaaatacttgatgagtttcatgagaagaagattttgagcttcctggtttactagaatttgag |
32616524 |
T |
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| Q |
320 |
tttatccatttggtgaagccgtcaacaaattcattctcactaatctcattgtctttgttggcatcaagatcgtgaaggagttttgagactgcttcctctg |
419 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32616523 |
tttatccatttggtgaagccatcaacaaattcattctcactaatctcattgtctttgttggcatcaagatcgtgaaggagttttgagactgcttcctctg |
32616424 |
T |
|
| Q |
420 |
catctacagccttaccaaaatgagtctccctaactactttctctaactcggatcttgaaacatggttattgccatcgccatcaacttgctcaaataacct |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32616423 |
catctacagccttaccaaaatgagtctccctaactactttctctaactcggatcttgaaacatggttatcgccatcgccatcaacttgctcaaataacct |
32616324 |
T |
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| Q |
520 |
attgcatcacaaggagcaagaaaacactcataaaaaacatatttatatatactgtcatacgtgtaat--------taaatatgcagaccttttgatagca |
611 |
Q |
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| T |
32616323 |
attgcatcacaaggagcaagaaaacactcataaaaaacatatttatatatattgtcatacgtgtaatcaaagatataaatatgcagaccttttgatagca |
32616224 |
T |
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| Q |
612 |
tctttatcagctgtaccatcatcatggagcatcctaccaa |
651 |
Q |
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| T |
32616223 |
tctttatcagctgtaccatcatcatggagcatcctaccaa |
32616184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 32616915 - 32616699
Alignment:
| Q |
10 |
gcagtcacccctttggtttgattctcttccattaccttctcaacatcttcccatgtctaataaagaatcattcatataccatttgtaaacaaattttgtt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
32616915 |
gcagtcacccctttggtttgattctcttccattaccttctcaacatcttcccatgtctaataaacaatcattcatataccatttgtaaacaaatttt-tt |
32616817 |
T |
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| Q |
110 |
attgatcaagt------gtagaaaaaatggaagaaattggtttaaatgcaattttagtcaatttagtatccatgcttctaaatttgagaatgtaggtagt |
203 |
Q |
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| T |
32616816 |
attgatcaagttcaagtgtagcaaaaatggaagaaattggtttaaatgcaattttagtcaatttagtatccatgtttctaaatttgagaatgtaggtagt |
32616717 |
T |
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| Q |
204 |
atccatgtttctaatatt |
221 |
Q |
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| T |
32616716 |
atccatgtttctaatatt |
32616699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 224 - 421
Target Start/End: Complemental strand, 32635025 - 32634824
Alignment:
| Q |
224 |
tgaatatgtcaagttatt-gagtaaaggaataagggaaatacttgatgagtttcatga---gaagaagattttgagcttcctgctttactagaatttgag |
319 |
Q |
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|||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| | ||| | | ||| |||| |
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| T |
32635025 |
tgaatatgacaagatatttgagtaaaggaataagggaaatacttgatgagtttcatgatgagaaggagattttgagctagcatcttgtccaaaatatgag |
32634926 |
T |
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| Q |
320 |
tttatccatttggtgaagccgtcaacaaattcattctcactaatctcattgtctttgttggcatcaagatcgtgaaggagttttgagactgcttcctctg |
419 |
Q |
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|||||| ||| ||| | || |||||||||||| |||||||||| ||||||||| |||| |||||||| | ||||||| ||||| |||||||||||||| |
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| T |
32634925 |
tttatcaattcggttataccatcaacaaattcagtctcactaatttcattgtctccgttgacatcaagaacttgaaggaattttgtgactgcttcctctg |
32634826 |
T |
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| Q |
420 |
ca |
421 |
Q |
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|| |
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| T |
32634825 |
ca |
32634824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 32635595 - 32635536
Alignment:
| Q |
10 |
gcagtcacccctttggtttgattctcttccattaccttctcaacatcttcccatgtctaa |
69 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32635595 |
gcagtcacccctttggtttgattctcttccattaccttctcaacatcttcccatgtctaa |
32635536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 587 - 651
Target Start/End: Complemental strand, 32634615 - 32634551
Alignment:
| Q |
587 |
taaatatgcagaccttttgatagcatctttatcagctgtaccatcatcatggagcatcctaccaa |
651 |
Q |
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|||| ||| |||||||||||||||||||||||||| |||||| ||||| | ||||| |||||||| |
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| T |
32634615 |
taaacatgtagaccttttgatagcatctttatcaggtgtaccgtcatctttgagcagcctaccaa |
32634551 |
T |
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