View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17895_high_11 (Length: 225)
Name: NF17895_high_11
Description: NF17895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17895_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 36606312 - 36606502
Alignment:
| Q |
19 |
aagattacaaatgacattatccatgcttgatataaaacacttataatgtgaaggtatgtattgtagagatcattttggccatgaagcaaaagtaggtata |
118 |
Q |
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| T |
36606312 |
aagattacaaatgacattctccatgcttgatataaaacacttataatgtgaaggtatgtattgtatagatcattttggccatgaagcaaaagtaggtata |
36606411 |
T |
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| Q |
119 |
taacacgagcatggagaatgctagccacatgtagtgatttgagatgacctgaccagtcatactcattgataatgatttatcatgtgacctt |
209 |
Q |
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| T |
36606412 |
taacaggagcatggagaatgctaaccacatgtagtgatttgagatgacctgaccagtcatactcattaataatgatttatcatgtgacctt |
36606502 |
T |
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Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 10 - 155
Target Start/End: Complemental strand, 27539753 - 27539604
Alignment:
| Q |
10 |
actgaaatgaagattacaaatgacattatccatgcttgatataa------aacacttataatgtgaaggtatgtattgtagagatcattttggccatgaa |
103 |
Q |
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| T |
27539753 |
actgacataaagattacaaatgacattatctatgcttgatataattataaaacacttatgatgtgaaggtatgtatcgtagagatcatattggttgtgaa |
27539654 |
T |
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| Q |
104 |
gcaaaagtaggtatataacacgagcatggagaatgctagccacatgtagtga |
155 |
Q |
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| T |
27539653 |
gcaaaagtagg--tatagcaagagcatagtgaatgctaaccacatgtagtga |
27539604 |
T |
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