View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17895_high_14 (Length: 202)
Name: NF17895_high_14
Description: NF17895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17895_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 124; Significance: 5e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 29 - 186
Target Start/End: Original strand, 14650205 - 14650364
Alignment:
| Q |
29 |
ttacataaatgcgttcatggtttaatgaacattcataatagaaatacattcatgatcatggtttgacgaacattcataacaaaaatactttcttcaaac- |
127 |
Q |
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| T |
14650205 |
ttacataaatgcgttcatggtttaacgaacattcataatagaaatacattcatgatcatggtttgacgaacattcataacagaaatacgttcttcaaaca |
14650304 |
T |
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| Q |
128 |
aaaagtag-aaatagaagggtgggtttactttaatcacaacaaattatcaaggtttaatg |
186 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
14650305 |
aaaagtagaaaatagaagggtgggtatactttaatcacaacaaattatcaagatttaatg |
14650364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 29 - 186
Target Start/End: Original strand, 34208624 - 34208783
Alignment:
| Q |
29 |
ttacataaatgcgttcatggtttaatgaacattcataatagaaatacattcatgatcatggtttgacgaacattcataacaaaaatactttcttcaaac- |
127 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||| |
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| T |
34208624 |
ttacataaatgcgttcatggtttaacaaacattcataatagaaatacattcatgatcatggtttgacaaacattcataacagaaatacgttcttcaaaca |
34208723 |
T |
|
| Q |
128 |
aaaagtag-aaatagaagggtgggtttactttaatcacaacaaattatcaaggtttaatg |
186 |
Q |
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|||||||| |||||||||||||||| ||||||||||||||| |||||||||| ||||||| |
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| T |
34208724 |
aaaagtagaaaatagaagggtgggtatactttaatcacaacgaattatcaagatttaatg |
34208783 |
T |
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