View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17895_low_10 (Length: 285)
Name: NF17895_low_10
Description: NF17895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17895_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 29036942 - 29037218
Alignment:
| Q |
1 |
aaaggaaagtggaagattttcagtgaaattgttttataatttggtgtatgatttgttgactccgaatctgcttttaagtaatttgaaagagatggtgttt |
100 |
Q |
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| T |
29036942 |
aaaggaaagtggaagattttcagtgaaattgtcttataatttggtgtatgatttgttgactccgaatctgcttttaagtaattcggaagagatggtgttt |
29037041 |
T |
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| Q |
101 |
gtgtccatttagaaaagtctggcgccctctaagcttgtggcattctcttggaaactttttctagatcgtatttccaccaaggtcaacttagcaaggagaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29037042 |
gtgtccatttagaaaagtctggcgccctctaagcttgtggcattctcttggaaactttttctagatcgtatttccaccaaggtcaacttagcaagcagaa |
29037141 |
T |
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| Q |
201 |
atgttttaccactgggtgcttccttgaattgccannnnnnnggtaggggtgaggaaagttccgctcatatattcttg |
277 |
Q |
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| T |
29037142 |
atgttttaccaccgggtgcttccttgaattgccatttttttggtagggatgaggaaagttccgctcatattttcttg |
29037218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 23 - 231
Target Start/End: Complemental strand, 20749132 - 20748925
Alignment:
| Q |
23 |
gtgaaattgttttataatttggtgtatgatttgttgactccgaatctgcttttaagtaatttgaaagagatggtgtttgtgtccatttagaaaagtctgg |
122 |
Q |
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| T |
20749132 |
gtgaaatcgtcttataacttggtgtatgacttgttgt-tccgaatgtggctttgagtagttcggaaaagctggtgtttgggtcaattttgaaaagtccgg |
20749034 |
T |
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| Q |
123 |
cgccctctaagcttgtggcattctcttggaaactttttctagatcgtatttccaccaaggtcaacttagcaaggagaaatgttttaccactgggtgcttc |
222 |
Q |
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| T |
20749033 |
cttcgtcaaaggttgtggctttctcttgaaaacttcttctagatcgtatttctaccaagatcaacttagaaaggagaaatgttttaccatcgagtgcttc |
20748934 |
T |
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| Q |
223 |
cttgaattg |
231 |
Q |
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||| ||||| |
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| T |
20748933 |
cttaaattg |
20748925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 210
Target Start/End: Original strand, 5451351 - 5451458
Alignment:
| Q |
103 |
gtccatttagaaaagtctggcgccctctaagcttgtggcattctcttggaaactttttctagatcgtatttccaccaaggtcaacttagcaaggagaaat |
202 |
Q |
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|||||||| | ||||| |||| || || ||| |||| || |||||||| |||| | ||| ||||||||| | |||||| |||| |||||||||||||| |
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| T |
5451351 |
gtccatttggcaaagtttggctccatcaaaggttgtagctttctcttgaaaacgtcttcatgatcgtattccgaccaagatcaatctagcaaggagaaat |
5451450 |
T |
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| Q |
203 |
gttttacc |
210 |
Q |
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|||||||| |
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| T |
5451451 |
gttttacc |
5451458 |
T |
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