View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17895_low_14 (Length: 212)
Name: NF17895_low_14
Description: NF17895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17895_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 7e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 4522500 - 4522677
Alignment:
| Q |
15 |
atattagcacttcaatgcgtatttgagagaggtggttatgtgcaaaagtggtgaaaagtgaagtgtaccattatggggatgttgagtcacccttgtatag |
114 |
Q |
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| T |
4522500 |
atattagcacttcaatgcgtatttgagagaggtggttatatgcaaaagtagtgaaaagtgaagtgtacctttatggggatgctgagtcacccttgtatag |
4522599 |
T |
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| Q |
115 |
gcgatgtggacgctaaccgtctccatgatatgcggcgtgatccaagggagtcgttagagatgatgttgctggtggaca |
192 |
Q |
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| T |
4522600 |
gcgatgtggacgctaaccgtctccatgatatgcggcgtgatccaagggagtggttagagatgatgttgctagtggaca |
4522677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 16363607 - 16363643
Alignment:
| Q |
43 |
gaggtggttatgtgcaaaagtggtgaaaagtgaagtg |
79 |
Q |
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| T |
16363607 |
gaggtggttatgtgcaaaagtgatgaaaaatgaagtg |
16363643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 45203643 - 45203570
Alignment:
| Q |
44 |
aggtggttatgtgcaaaagtggtgaaaagtgaagtgtaccattatggggatgttgagtcacccttgtataggcg |
117 |
Q |
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| T |
45203643 |
aggttgttatgtgcaaaagtgatgaaaagtgaagtgtaccttgatggtgacgctgagtcactcttatataggcg |
45203570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 2219880 - 2219929
Alignment:
| Q |
34 |
tatttgagagaggtggttatgtgcaaaagtggtgaaaagtgaagtgtacc |
83 |
Q |
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| T |
2219880 |
tatttgagagaagtggttatatgcaaaagtggtgaaaagtgaaatgtacc |
2219929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 9796656 - 9796617
Alignment:
| Q |
44 |
aggtggttatgtgcaaaagtggtgaaaagtgaagtgtacc |
83 |
Q |
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| T |
9796656 |
aggtggttatgtgcaaaagaggtgaaaagtgaagtgtacc |
9796617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 3098643 - 3098683
Alignment:
| Q |
42 |
agaggtggttatgtgcaaaagtggtgaaaagtgaagtgtac |
82 |
Q |
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| T |
3098643 |
agaggtggttatgtgccaaaatggtgaaaagtgaagtgtac |
3098683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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