View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17895_low_2 (Length: 427)
Name: NF17895_low_2
Description: NF17895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17895_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 44705281 - 44705686
Alignment:
| Q |
1 |
atgagtctgtgatgtaacatctgtaacagccgaagaaatcataaaatccttgatcatattttttattttaacaacttgatcggtatcattttattatgtt |
100 |
Q |
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| T |
44705281 |
atgagtccgtgacgcaacatctgtaacaaccgaa---atcataaaatccttgatcatattttttattttaacaacttgatcggtatcattttattatgtt |
44705377 |
T |
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| Q |
101 |
gtaatttaccaataaaacagttacacaacatctgtttttgacagtaacggtgaatacggaaaagaaatgattacgaatcaacaatcataaaaatcttaat |
200 |
Q |
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| T |
44705378 |
gtaatttagcaataaaacagttacacaacatctgtttttgacagtaacggtgaatacggaaaacaaatgattacgaatcaacaatcataaaaatcttaat |
44705477 |
T |
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| Q |
201 |
ataataacgttgtacagcatcgaattcgatttgctaagtgttactcagtgataaagaagaaagaaacggcggcgtaccttccggcgaacagtgaggagac |
300 |
Q |
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| T |
44705478 |
ataataacgttgtacaacatcgaattcgatttgctaagtgttactcagtgataaagaagaaagaaacggcggcgtaccttccggcgaacagtgaggagac |
44705577 |
T |
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| Q |
301 |
aacgaccgtcgggatccattagaacaagctcatctaggtcacgagaatcaggtccatatgagtcaactctgaaaacgagttgaccatgagaatcatagac |
400 |
Q |
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| T |
44705578 |
aacgaccgtcgggatccattagaacaagctcatctaggtcacgagaatcaggtccatatgagtcaactctgaaaacgagttgaccatgagaatcatagac |
44705677 |
T |
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| Q |
401 |
ggtgaaacc |
409 |
Q |
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| T |
44705678 |
ggtgaaacc |
44705686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 268 - 409
Target Start/End: Original strand, 44715513 - 44715654
Alignment:
| Q |
268 |
ggcggcgtaccttccggcgaacagtgaggagacaacgaccgtcgggatccattagaacaagctcatctaggtcacgagaatcaggtccatatgagtcaac |
367 |
Q |
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| T |
44715513 |
ggcggcgtaccttccggtgaacggtgaggaggcaacggccttggggatccatgagaatcagctcatgtaggtcacgagaatcaggtccatatgagtcgac |
44715612 |
T |
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| Q |
368 |
tctgaaaacgagttgaccatgagaatcatagacggtgaaacc |
409 |
Q |
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| T |
44715613 |
acggaaggcgacttgaccgttgcaatcatagacggtgaaacc |
44715654 |
T |
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