View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17895_low_4 (Length: 398)
Name: NF17895_low_4
Description: NF17895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17895_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 13715261 - 13715633
Alignment:
| Q |
1 |
atagaagatgaaccacgacctttaataagattgcaactaagatgaacttcataaataagcttgtgaaaaaggctttgcatggaattgttctcattggaaa |
100 |
Q |
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| T |
13715261 |
atagaagatgaaccacgacctttaataagattgcagctaagatgaacttcataaataagcttgtgaaaaaggctttgcatggaattgttctcattggaaa |
13715360 |
T |
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| Q |
101 |
agcgttgtttgttttgttcaacccaaataatccaaatagtatgaagcttggcagaaagcatgatttgtttcactggagggctccaaacattctacgagca |
200 |
Q |
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| T |
13715361 |
agcgttgtctgttttgttcaacccaaataat---------atgaagcttggcagaaagcatgatttgtttcactggagggctccaaacattctacgagca |
13715451 |
T |
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| Q |
201 |
atgcagcggaatatcccaagatgataggtcgagaggttgatttatattgttgctgagccaattccaaaattgtgaggtgacagagcaattaaaaataatg |
300 |
Q |
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| T |
13715452 |
atgtagcggaatatcccaagatgataggtcgagaggttgatttatattgttgctgagccaattccaaaattgtgaggtgacagagcaattaaaaataatg |
13715551 |
T |
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| Q |
301 |
tgctcagctgtcatatagcagaagcaacaagcagagaccaaaatacaccctcttattcgtaactggtcattagttagaagct |
382 |
Q |
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| T |
13715552 |
tgctcagctgtcatatagcagaagcaacaaacagagaccaaaatacaccctcttattcgtaactggtcatcagttagaagct |
13715633 |
T |
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