View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17895_low_6 (Length: 349)
Name: NF17895_low_6
Description: NF17895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17895_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 9 - 334
Target Start/End: Complemental strand, 4223191 - 4222866
Alignment:
| Q |
9 |
gaagaatattagtattaaatattttaaacaacaatattttgaatttagaaaatgttcaaaattattttcttaggattgtttttatatgacaatgcttctt |
108 |
Q |
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| T |
4223191 |
gaagaatattagtattaaatattttaaacaacaatattttgaatttagaaaatgttcaaaattattttcttaggattgtttttatatgacaatgcttctt |
4223092 |
T |
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| Q |
109 |
attctgatatttcttaacatatagttgcagccaacggacctgaaattatcgccgaatggaaaacaaggatgaaaagatgctcacctcaagcgacatacta |
208 |
Q |
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| T |
4223091 |
attctgatatttctgaacatatacttgcagctaacggacctgaaattatcgccgaatggaaaacaaggatgaaaagatgctcacctcaagcgacatacta |
4222992 |
T |
|
| Q |
209 |
ttacatgagtaaacaaatcctcacatcgcagatttgttcttataatgacaacttcagccaacaaaaacgtcattgctataaaaggaactcttggctacaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4222991 |
ttacatgagtaaacaaatcctcacatcgcagatttgttcttataatgacaacttcagccaacaaaaacgtcattgctataaaaggaactcttggctacaa |
4222892 |
T |
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| Q |
309 |
tgcaccagagattttaaccacaaaga |
334 |
Q |
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| T |
4222891 |
tgcaccagagattttaaccacaaaga |
4222866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 3822126 - 3822044
Alignment:
| Q |
9 |
gaagaatattagtattaaatattttaaacaacaatattttgaatttagaaaatgttcaaaattattttcttaggattgttttt |
91 |
Q |
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| T |
3822126 |
gaagaatattagtattaaatattttaaacaacaatattttgaatttagaaaatgttcaaaattattttcttaggattcttttt |
3822044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 3803828 - 3803773
Alignment:
| Q |
26 |
aatattttaaacaacaatattttgaatttagaaaatgttcaaaattattttcttag |
81 |
Q |
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| T |
3803828 |
aatattttaaacaacaatattttgaatttagaaaatgttcaaaattattttcttag |
3803773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 3812457 - 3812406
Alignment:
| Q |
40 |
caatattttgaatttagaaaatgttcaaaattattttcttaggattgttttt |
91 |
Q |
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| T |
3812457 |
caatattttgaatttagaaaatgttcaaaattattttcttaggattgttttt |
3812406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 314
Target Start/End: Original strand, 3907859 - 3907992
Alignment:
| Q |
188 |
ctcacctcaagcgacatactattacatgagtaaacaaatcctcacatcgcaga-tttgttctt------ataatgacaacttcagccaacaaaaacgtca |
280 |
Q |
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|||||||||||| |||||||||| ||||| ||||||||||||||||| |||| |||| |||| ||||||||||||| ||||||| ||| ||| |
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| T |
3907859 |
ctcacctcaagcaacatactattggatgagcaaacaaatcctcacatcacagattttggtctttcaagactaatgacaacttctgccaacaccaacatca |
3907958 |
T |
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| Q |
281 |
ttgctataaaaggaactcttggctacaatgcacc |
314 |
Q |
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|||||| | ||||| |||||| ||||||||||| |
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| T |
3907959 |
ttgctacagcaggaagtcttggatacaatgcacc |
3907992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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