View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17895_low_7 (Length: 339)

Name: NF17895_low_7
Description: NF17895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17895_low_7
NF17895_low_7
[»] chr3 (9 HSPs)
chr3 (18-266)||(24982154-24982402)
chr3 (21-224)||(24497120-24497330)
chr3 (21-107)||(25085149-25085235)
chr3 (18-109)||(31825540-31825631)
chr3 (21-105)||(24923447-24923531)
chr3 (18-101)||(24919877-24919960)
chr3 (21-107)||(21584582-21584668)
chr3 (294-329)||(24982431-24982466)
chr3 (70-107)||(14858633-14858670)
[»] chr7 (2 HSPs)
chr7 (21-104)||(10575498-10575581)
chr7 (18-99)||(39954838-39954919)
[»] chr8 (1 HSPs)
chr8 (21-107)||(14261017-14261103)
[»] chr2 (1 HSPs)
chr2 (18-76)||(41027680-41027738)


Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 24982154 - 24982402
Alignment:
Q  18 gctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaagaagtaacacta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24982154 gctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaagaagtaacacta 24982253  T
Q  118 tattctgttttatgctttaactgtgtaatttgaacatgtgattgttctttaatatgcttatttggattgttcctttgtaagtttcaacaagatttgaatc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24982254 tattctgttttatgctttaactgtgtaatttgaacatgtgattgttctttaaaatgcttatttggattgttcctttgtaagtttcaacaagatttgaatc 24982353  T
Q  218 taatgaattaaactgttctttaatattttctggtgaattatgattctac 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24982354 taatgaattaaactgttctttaatattttctggtgaattatgattctac 24982402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 21 - 224
Target Start/End: Complemental strand, 24497330 - 24497120
Alignment:
Q  21 aggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaagaa------gtaaca 114  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||      | | |     
T  24497330 aggaggaagactgtgacagccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggttttggaggttgatgaagaaaaacaagaagcc 24497231  T
Q  115 ctatattctgttttatgcttt-aactgtgtaatttgaacatgtgattgttctttaatatgcttatttggattgttcctttgtaagtttcaacaagatttg 213  Q
    || |  | ||| ||||||||| |||| ||| ||| |||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  24497230 ctcttatgtgtattatgcttttaactttgttattagaacatgtaattgttctttaaaatgcttatttagattgttcctttgtaagtttcaacaagatttg 24497131  T
Q  214 aatctaatgaa 224  Q
    |||||||||||    
T  24497130 aatctaatgaa 24497120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 25085149 - 25085235
Alignment:
Q  21 aggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaaga 107  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||    
T  25085149 aggaggaagactgtgacagccatggatgttgtctatgctttgaagagacagggaagaaccctctatggttttggaggttgaagaaga 25085235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 31825631 - 31825540
Alignment:
Q  18 gctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaagaag 109  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||| ||||| |||||| |||||||    
T  31825631 gctaggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggaggttgatgaagaag 31825540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 24923531 - 24923447
Alignment:
Q  21 aggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaa 105  Q
    ||||||||||| || || |||||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||    
T  24923531 aggaggaagacagtgacagccatggatgttgtctatgctttgaagagacagggaagaaccctctatggatttggaggttgaagaa 24923447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 24919960 - 24919877
Alignment:
Q  18 gctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttga 101  Q
    |||||||||||||| || || ||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||| ||||||    
T  24919960 gctaggaggaagacagtgacagccatggatgtcgtctatgctttgaagaggcagggaagaaccctctatggattcggaggttga 24919877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 21584668 - 21584582
Alignment:
Q  21 aggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaaga 107  Q
    |||||||||||||| || || ||||||||||| |||||||||||||| ||||||||||| || ||||| ||||| ||||||||||||    
T  21584668 aggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgctttatggattcggaggttgaagaaga 21584582  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 294 - 329
Target Start/End: Original strand, 24982431 - 24982466
Alignment:
Q  294 aatcttatagaaaatcattttaattaaaattctgtg 329  Q
    ||||||||||||||||||||||||||||||||||||    
T  24982431 aatcttatagaaaatcattttaattaaaattctgtg 24982466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 14858670 - 14858633
Alignment:
Q  70 aaggaagaaccctctatggtttcggtggttgaagaaga 107  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  14858670 aaggaagaaccctctacggttttggtggttgaagaaga 14858633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 10575498 - 10575581
Alignment:
Q  21 aggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaaga 104  Q
    |||||||| ||||| || || ||||||||||| || ||  | ||||||||||||||||||||||||||||||||||||||||||    
T  10575498 aggaggaaaactgtgactgctatggatgttgtttacgcgcttaagagacaaggaagaaccctctatggtttcggtggttgaaga 10575581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 39954919 - 39954838
Alignment:
Q  18 gctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggtt 99  Q
    ||||||||||| ||||||||||||||||||||||| |||||| | ||||| || ||||| || ||||| |||||||||||||    
T  39954919 gctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggtttcggtggtt 39954838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 14261103 - 14261017
Alignment:
Q  21 aggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaaga 107  Q
    ||||||||||| ||||| || ||||||||||| ||||| ||||||||||||||||| ||  | ||||||||||| ||||||||||||    
T  14261103 aggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggactttgtatggtttcggaggttgaagaaga 14261017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 41027680 - 41027738
Alignment:
Q  18 gctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 76  Q
    |||||||| ||||||||||| || ||||||||||| ||||| |||||||||||||||||    
T  41027680 gctaggagaaagactgttactgctatggatgttgtttatgcattgaagagacaaggaag 41027738  T

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