View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17895_low_8 (Length: 315)

Name: NF17895_low_8
Description: NF17895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17895_low_8
NF17895_low_8
[»] chr3 (4 HSPs)
chr3 (17-306)||(36073695-36073984)
chr3 (215-305)||(36145995-36146085)
chr3 (52-162)||(55350363-55350473)
chr3 (96-162)||(51489821-51489887)
[»] chr5 (3 HSPs)
chr5 (17-206)||(11768408-11768599)
chr5 (80-162)||(24153926-24154008)
chr5 (140-207)||(33319256-33319321)
[»] chr6 (1 HSPs)
chr6 (222-298)||(26531060-26531136)
[»] chr2 (3 HSPs)
chr2 (77-214)||(37784410-37784546)
chr2 (129-220)||(16427594-16427683)
chr2 (129-216)||(26179622-26179708)
[»] chr8 (1 HSPs)
chr8 (77-216)||(30743-30881)
[»] chr4 (2 HSPs)
chr4 (84-162)||(11960131-11960209)
chr4 (65-107)||(36395808-36395850)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 36073984 - 36073695
Alignment:
Q  17 aatagtgagtgaaagtgtgagagacagttaacattagagatttaaaggtgttaagatataatttaatggtgttaagatggaagggaggtgtgtgtctatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36073984 aatagtgagtgaaagtgtgagagacagttaacattagagatttaaaggtgttaagatataatttaatggtgttaagatggaagggaggtgtgtgtctatt 36073885  T
Q  117 tggtaacaaaataagggaggttagtgtttgatttaaaactagagggaagtatttgtgttatttaagacaattttaagggaggttagtgtaacttaccctt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  36073884 tggtaacaaaataagggaggttagtgtttgatttaaaactagagggaagtatttgtgttatttaagacaattttaagggaggttagtgtaacttatccct 36073785  T
Q  217 ttaattatgtattcattaattttatttttacacgcatgtcttttaatatttccttacatgtttttaaaagcttattggaacctgatgatg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36073784 ttaattatgtattcattaattttatttttacacgcatgtcttttaatatttccttacatgtttttaaaagcttattggaaccttatgatg 36073695  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 215 - 305
Target Start/End: Complemental strand, 36146085 - 36145995
Alignment:
Q  215 ttttaattatgtattcattaattttatttttacacgcatgtcttttaatatttccttacatgtttttaaaagcttattggaacctgatgat 305  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||    
T  36146085 ttttaattatgtattcattaattttatttttgcacgcatgtcttttaatatttccttacacgttttcaaaagcttattggaaccttatgat 36145995  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 162
Target Start/End: Original strand, 55350363 - 55350473
Alignment:
Q  52 agagatttaaaggtgttaagatataatttaatggtgttaagatggaagggaggtgtgtgtctatttggtaacaaaataagggaggttagtgtttgattta 151  Q
    |||||||||| ||||||||||| |||||| ||| |||| ||||  ||||||||||| |||| ||||| ||||||| ||||||||||||||||||||||||    
T  55350363 agagatttaacggtgttaagatgtaattttatgatgttgagataaaagggaggtgtttgtccatttgataacaaagtaagggaggttagtgtttgattta 55350462  T
Q  152 aaactagaggg 162  Q
    |||||| ||||    
T  55350463 aaactaaaggg 55350473  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 51489821 - 51489887
Alignment:
Q  96 gaagggaggtgtgtgtctatttggtaacaaaataagggaggttagtgtttgatttaaaactagaggg 162  Q
    |||||||||||| |||||||||| ||| || ||||||||||||| | ||   |||||||||||||||    
T  51489821 gaagggaggtgtttgtctatttgttaaaaacataagggaggttaatattcattttaaaactagaggg 51489887  T

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Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 11768599 - 11768408
Alignment:
Q  17 aatagtgagtgaaagtgtgagagacagtta--acattagagatttaaaggtgttaagatataatttaatggtgttaagatggaagggaggtgtgtgtct- 113  Q
    |||||||||||||||| ||||||| |||||  |||  |||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||| |     
T  11768599 aatagtgagtgaaagtatgagagagagttataacag-agagatttaatgatgttaaaatataatttaatggtgttaagatggaagggaggtgtgtgtgtc 11768501  T
Q  114 -atttggtaacaaaataagggaggttagtgtttgatttaaaactagagggaagtatttgtgttatttaagacaattttaagggaggttagtgta 206  Q
     ||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||  ||| ||||||||||||||    
T  11768500 catttgataacaaaataagggaggttagtgtttgatttaaaactagaggggagt-tttgtgttatttaagacaaccttaggggaggttagtgta 11768408  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 162
Target Start/End: Original strand, 24153926 - 24154008
Alignment:
Q  80 taatggtgttaagatggaagggaggtgtgtgtctatttggtaacaaaataagggaggttagtgtttgatttaaaactagaggg 162  Q
    |||||||||||| ||  ||||||||||| ||| |||||| ||  ||  |||||||||||| |||| | |||||||||||||||    
T  24153926 taatggtgttaatataaaagggaggtgtttgtttatttgatagaaacttaagggaggttaatgttagttttaaaactagaggg 24154008  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 33319256 - 33319321
Alignment:
Q  140 gtgtttgatttaaaactagagggaagtatttgtgttatttaagacaattttaagggaggttagtgtaa 207  Q
    ||||||||||||||| ||  |||  || |||||||||||||||| ||||||| ||||||||| |||||    
T  33319256 gtgtttgatttaaaaataagggg--gtgtttgtgttatttaagataattttaggggaggttaatgtaa 33319321  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 222 - 298
Target Start/End: Original strand, 26531060 - 26531136
Alignment:
Q  222 tatgtattcattaattttatttttacacgcatgtcttttaatatttccttacatgtttttaaaagcttattggaacc 298  Q
    |||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26531060 tatgaattcattaattttatttttgctcgcatgtcttttaatatttccttacatgtttttaaaagcttattggaacc 26531136  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 214
Target Start/End: Original strand, 37784410 - 37784546
Alignment:
Q  77 atttaatggtgttaagatggaagggaggtgtgtgtctatttggtaacaaaataagggaggttagtgtttgatttaaaactagagggaagtatttgtgtta 176  Q
    |||||||||||||||||||||||||||| || |||  ||||| ||  |||||||||||||||||||| || ||| ||| ||||| |  || ||| |||||    
T  37784410 atttaatggtgttaagatggaagggaggagtttgttaatttgatactaaaataagggaggttagtgtctggtttgaaattagagtg-ggtgtttatgtta 37784508  T
Q  177 tttaagacaattttaagggaggttagtgtaacttaccc 214  Q
    |||||| |||  ||| ||||||||||| ||| ||||||    
T  37784509 tttaagtcaaccttaggggaggttagtataatttaccc 37784546  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 129 - 220
Target Start/End: Original strand, 16427594 - 16427683
Alignment:
Q  129 aagggaggttagtgtttgatttaaaactagagggaagtatttgtgttatttaagacaattttaagggaggttagtgtaacttacccttttaa 220  Q
    ||||||||||| |||||  || ||||||||||||  || || ||||||||||||| |||||||| |||||| ||||||| ||||||| ||||    
T  16427594 aagggaggttaatgtttatttcaaaactagaggg--gtgttagtgttatttaagaaaattttaaaggaggtgagtgtaatttaccctattaa 16427683  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 26179622 - 26179708
Alignment:
Q  129 aagggaggttagtgtttgatttaaaactagagggaagtatttgtgttatttaagacaattttaagggaggttagtgtaacttaccctt 216  Q
    |||||||||| ||||||  |||||||||||||||  || |||||||||||||||| ||  | ||||||||| ||||||| ||||||||    
T  26179622 aagggaggtttgtgtttagtttaaaactagagggg-gtgtttgtgttatttaagaaaacctcaagggaggtgagtgtaagttaccctt 26179708  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 216
Target Start/End: Original strand, 30743 - 30881
Alignment:
Q  77 atttaatggtgttaagatggaagggaggtgtgtgtctatttggtaacaaaataagggaggttagtgtttgatttaaaactagagggaagtatttgtgtta 176  Q
    ||||||| |||||||| | ||||||| || | |||| ||||| |||| |||||||||||||||||||||  |||||||||| ||||  || ||| |||||    
T  30743 atttaatagtgttaaggttgaagggaagtatttgtcaatttgataactaaataagggaggttagtgtttagtttaaaactaaaggg-ggtctttttgtta 30841  T
Q  177 tttaagacaattttaagggaggttagtgtaacttaccctt 216  Q
    ||||||| ||  ||| ||  ||||||||||| || |||||    
T  30842 tttaagaaaaccttacggttggttagtgtaatttgccctt 30881  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 84 - 162
Target Start/End: Complemental strand, 11960209 - 11960131
Alignment:
Q  84 ggtgttaagatggaagggaggtgtgtgtctatttggtaacaaaataagggaggttagtgtttgatttaaaactagaggg 162  Q
    ||||||||  |||||||| ||||| | || ||||| ||||||||||||||||||| ||||||  |||||||||||||||    
T  11960209 ggtgttaaagtggaagggtggtgtttttcaatttgataacaaaataagggaggtttgtgtttagtttaaaactagaggg 11960131  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 36395808 - 36395850
Alignment:
Q  65 tgttaagatataatttaatggtgttaagatggaagggaggtgt 107  Q
    |||||||||  |||||||||||||||| |||||||||||||||    
T  36395808 tgttaagatgcaatttaatggtgttaacatggaagggaggtgt 36395850  T

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