View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17895_low_9 (Length: 287)
Name: NF17895_low_9
Description: NF17895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17895_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 29036968 - 29036697
Alignment:
| Q |
1 |
ttcactgaaaatcttccacttccctttgaaattataagacaatttcactagtaattgatcctctagtccacatgatgcaccagcagcgtgaacaatttga |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29036968 |
ttcactgaaaatcttccactttcctttgaaattataagacaatttcactagtaattgatcctctagtccacatgatgcaccagcagcgagaacaatttga |
29036869 |
T |
|
| Q |
101 |
tctaatgagatcaaatttctctttt-aaatcttctattgcacaatggagcatccatagaggacccatattcatattcaccattggtatatatttgtgcag |
199 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
29036868 |
tctaatgagataaaatttctctttttaaatcttctattgcacaatggagcatccatagaggacccatattcatattcactattgatatatatttgtgcag |
29036769 |
T |
|
| Q |
200 |
aaatgtttctcatacacaaaatccgatatcattatcacacatatataaagtttcggattttattgtttttct |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29036768 |
aaatgtttctcatacacaaaatccgatatcattatcacacatatataaagtttcggattttattgtttttct |
29036697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University