View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17896_high_14 (Length: 383)
Name: NF17896_high_14
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17896_high_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 1421284 - 1421064
Alignment:
| Q |
16 |
atgggcaagagctcaaacaaaattcattattttgatcacaagagattgaacaaaattatttattttcatcacaagaaattgaacataattcattaatctg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1421284 |
atgggcaagagctcaaacaaaattcattattttgatcacaagagattgaacaaaattatttattttcatcacaagaaattgaacataattcattaatttg |
1421185 |
T |
|
| Q |
116 |
atttcattttacgtgtagataagcggtggtggattcaagaggtcaaattcgttgtgatttgaaagaaacatcgtcacaggagcttgaacataactcatta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
1421184 |
atttcattttacgtgtagataagcggtggtggattcaagaggtcaaattcgttgtgatttgaaagaaacatcgtcacaagagcttgaacataattcatta |
1421085 |
T |
|
| Q |
216 |
ttttgaatgtgaatattttga |
236 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1421084 |
ttttgaatgtgaatattttga |
1421064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 252 - 369
Target Start/End: Complemental strand, 1420635 - 1420518
Alignment:
| Q |
252 |
actattggaagaaatttgcagccatgcatttaacgtatcaaaagacttggcaattgtctgcagcaatttgac-atggctggataacctacacgttctcgt |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
1420635 |
actattggaagaaatttgcagccatgcatttaacgtatc-aaagacttggcaattgtctgcagcaatttgactatggctggataacctacacgttctctt |
1420537 |
T |
|
| Q |
351 |
tcaacagagatttaaatct |
369 |
Q |
| |
|
|||| |||||||| ||||| |
|
|
| T |
1420536 |
tcaatagagatttgaatct |
1420518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University