View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17896_high_15 (Length: 365)
Name: NF17896_high_15
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17896_high_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 15 - 365
Target Start/End: Complemental strand, 35697550 - 35697200
Alignment:
| Q |
15 |
aggagacaatactcaacatccccaaatgaatcaaatttctatttctaatccaaactatatatgcatcacaaccattaaaattaccaattaattttacaac |
114 |
Q |
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| T |
35697550 |
aggagacaatactcaacatccccaaatgaatcaaatttctatttctaatccaaactatatatgaatcacaaccataaaaattaccaattaattttacaac |
35697451 |
T |
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| Q |
115 |
aagcacctcatcaaatataagacgattcataagttagttcagagtcagcaacacgaggcttattagtgctaccactcttcttatggttaccccctccaca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
35697450 |
aagcacctcatcaaatataagacgattcataagttagttcagagtcagcaacacgaggtttattagtgctaccactcttcttatggttaccccctccgca |
35697351 |
T |
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| Q |
215 |
agttattgaaatctcacaccctaatgctgttccaaagcacgaaaacaaaccgctaccttgccttcgatgcttacctttacctttccctttcgtttgtttc |
314 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35697350 |
agttatcgaaatctcacaccctaatgctgttccaaagcacgaaaacaaaccgctaccttgccttcgattcttacctttacctttccctttcgtttgtttc |
35697251 |
T |
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| Q |
315 |
ccagttttcttcacactatcattattattattccccaaatgatcataaacc |
365 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35697250 |
ccagttttcttcacactaccattattattattccccaaatgatcataaacc |
35697200 |
T |
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