View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17896_high_19 (Length: 341)
Name: NF17896_high_19
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17896_high_19 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 26990505 - 26990168
Alignment:
| Q |
1 |
atctgtcttagcacttcgagtattttggcaagcgcaccatcagtttcattctcatcaatattcaatgcagcaagtgatttgcattggaggccgaagtcct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26990505 |
atctgtcttagcacttcgagtattttggcaagcgcaccatcattttcattctcatcaatattcaatgcagcaagtgatttgcattggaggccgaagtcct |
26990406 |
T |
|
| Q |
101 |
gacaacttgaattgaaaaagtggtatctctccatcaatatcagattatctctgtacttcggccatacctacaacattttcatacatctcaataaaggagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26990405 |
gacaacttgaattgaaaaagtggtatctctccatcaatatcagattatctctgtacttcggccatacctacaacattttcatacatctcaataaaggagg |
26990306 |
T |
|
| Q |
201 |
tgactttggtttattgattctcaaatattgataaacaatgacatatgaatcattaaatggatagatcttttgcacatttgaatctatgaacttcgtctat |
300 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26990305 |
tgactttggtttattgattctcaaa---tgataaacaatgacatatgaatcattaaatggatagatcttttgcacatttgaatctatgaactttgtctat |
26990209 |
T |
|
| Q |
301 |
agagaataaactttagaggaatgattcatataatttgaaaa |
341 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
26990208 |
agagaataaactttagaggaatgattcatataatttgaaaa |
26990168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 27074427 - 27074751
Alignment:
| Q |
1 |
atctgtcttagcacttcgagtattttggcaagcgcaccatcagtttcattctcatcaatattcaatgcagcaagtgatttgcattggaggccgaagtcct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||| ||||||| |
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| T |
27074427 |
atctgtcttagcacttcgagtattttggcaagcgcaccatcagtttcattctcatcaatatgcaatgcaacaagtgatttgcgttggaggccaaagtcct |
27074526 |
T |
|
| Q |
101 |
gacaacttgaattgaaaaagtggtatctctccatcaatatcagattatctctgtacttcggccatacctacaacattttcatacatctcaataaaggagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||| |||||| ||||||||||||| |
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| T |
27074527 |
gacaacttgaattgaaaaagtggtatctctccatcaatatcagattatctctgtactttggccatacctacagca-tttaatacatgtcaataaaggagg |
27074625 |
T |
|
| Q |
201 |
tgactttggtttattgattctcaaatattgataaacaatgacatatgaatcattaaatggatagatcttttgcacatttgaatctatgaacttcgtctat |
300 |
Q |
| |
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|| |||||||||||||||||||||| ||||||| |||||||| |||||||||||| |||||| ||||| || ||||| || |||||||||| || ||| |
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| T |
27074626 |
tgcctttggtttattgattctcaaa---tgataaaaaatgacatctgaatcattaaaaggataggtctttagcgcatttcaaactatgaacttagtttat |
27074722 |
T |
|
| Q |
301 |
agagaataaactttagaggaatgattcat |
329 |
Q |
| |
|
||||| ||| ||||| ||||||||||||| |
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| T |
27074723 |
agagattaagctttaaaggaatgattcat |
27074751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 27029387 - 27029211
Alignment:
| Q |
1 |
atctgtcttagcacttcgagtattttggcaagcgcaccatcagtttcattctcatcaatattcaatgcagcaagtgatttgcattggaggccgaagtcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27029387 |
atctgtcttagcacttcgagtattttggcaagcgcaccatcagtttcattctcatcaatattcaatgcagcaagtgatttgcattggaggccaaagtcct |
27029288 |
T |
|
| Q |
101 |
gacaacttgaattgaaaaagtggtatctctccatcaatatcagattatctctgtacttcggccatacctacaacatt |
177 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27029287 |
gacaacttgaattgaaaaagtggtatctctccatcaatatcagattatctctgtacttcggccatacctacaacatt |
27029211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 4 - 178
Target Start/End: Complemental strand, 21434669 - 21434495
Alignment:
| Q |
4 |
tgtcttagcacttcgagtattttggcaagcgcaccatcagtttcattctcatcaatattcaatgcagcaagtgatttgcattggaggccgaagtcctgac |
103 |
Q |
| |
|
||||| ||||||| ||| ||| |||||||||| |||||||||||||| |||||||||| ||| |||||||||||||||| | |||| |||| ||||| | |
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| T |
21434669 |
tgtctaagcactttgagaattctggcaagcgctccatcagtttcattttcatcaatatgcaactcagcaagtgatttgcaattgaggtcgaattcctggc |
21434570 |
T |
|
| Q |
104 |
aacttgaattgaaaaagtggtatctctccatcaatatcagattatctctgtacttcggccatacctacaacattt |
178 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | | | || |||||||||||||||||| |
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| T |
21434569 |
aacttgaattgaaaaagtggtatctctccatcaatatcagattatctttatgcatccgccatacctacaacattt |
21434495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 206 - 329
Target Start/End: Complemental strand, 27029212 - 27029092
Alignment:
| Q |
206 |
ttggtttattgattctcaaatattgataaacaatgacatatgaatcattaaatggatagatcttttgcacatttgaatctatgaacttcgtctatagaga |
305 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||| || ||||| || |||| |||||| | |||||||| |
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| T |
27029212 |
ttggtttattgattctcaaat---gataaacaatgacatctgaatcattaaatgctaagatctttagcgcatttcaaactattaacttcatttatagaga |
27029116 |
T |
|
| Q |
306 |
ataaactttagaggaatgattcat |
329 |
Q |
| |
|
||||| |||||||||||||||||| |
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| T |
27029115 |
ataaaatttagaggaatgattcat |
27029092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 246 - 329
Target Start/End: Complemental strand, 21434450 - 21434367
Alignment:
| Q |
246 |
tgaatcattaaatggatagatcttttgcacatttgaatctatgaacttcgtctatagagaataaactttagaggaatgattcat |
329 |
Q |
| |
|
||||||||||| |||||| || ||| ||||||||||| |||||| ||| | |||||||||||||||||||||||||| ||||| |
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| T |
21434450 |
tgaatcattaagtggatatatatttagcacatttgaaactatgagcttggaatatagagaataaactttagaggaatggttcat |
21434367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 252 - 329
Target Start/End: Complemental strand, 27153275 - 27153198
Alignment:
| Q |
252 |
attaaatggatagatcttttgcacatttgaatctatgaacttcgtctatagagaataaactttagaggaatgattcat |
329 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| |||||| || || | |||||||||||||||||||||||| ||||| |
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|
| T |
27153275 |
attaagtggatagatctttagcacatttgaaactatgagctgggtatttagagaataaactttagaggaatggttcat |
27153198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 34692762 - 34692535
Alignment:
| Q |
1 |
atctgtcttagcacttcgagtattttggcaagcgcaccatcagtttcattctcatcaatattcaatgcagcaagtgatttgcattggaggccgaagtcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34692762 |
atctgtcttagcacttcgagtattttggcaagcgcaccatcaatttcattctcatcaatattcaatgcagcaagtgatttgcattggaggccgaagtcct |
34692663 |
T |
|
| Q |
101 |
gacaacttgaattgaaaaagtggtatctctccatcaatatcagattatctctgtacttcggccatacctacaacattttcatacatctcaataaaggagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34692662 |
gacaacttgaattgaaaaagtggtatctctccatcaatatcagattatctctgtacttcggccatacctacaacattttcatacatctcaataaaggagg |
34692563 |
T |
|
| Q |
201 |
tgactttggtttattgattctcaaatat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
34692562 |
tgactttggtttattgattctcaaatat |
34692535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 220 - 341
Target Start/End: Complemental strand, 34692351 - 34692230
Alignment:
| Q |
220 |
ctcaaatattgataaacaatgacatatgaatcattaaatggatagatcttttgcacatttgaatctatgaacttcgtctatagagaataaactttagagg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34692351 |
ctcaaatattgataaacaatgacatatgaatcattaaatggatagatcttttgcacatttgaatctatgaactttgtctatagagaataaactttagagg |
34692252 |
T |
|
| Q |
320 |
aatgattcatataatttgaaaa |
341 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
34692251 |
aatgattcatataatttgaaaa |
34692230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 50172173 - 50172342
Alignment:
| Q |
10 |
agcacttcgagtattttggcaagcgcaccatcagtttcattctcatcaatattcaatgcagcaagtgatttgcattggaggccgaagtcctgacaacttg |
109 |
Q |
| |
|
|||| ||| |||||||| ||||| || ||||| |||||||| ||||| | ||| | ||||||| |||||||| | || ||| || | | |||| |||| |
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| T |
50172173 |
agcatttcaagtatttttgcaagtgctccatctgtttcattttcatcgctcttcgtttcagcaagagatttgcaattgaagccaaactgccgacagcttg |
50172272 |
T |
|
| Q |
110 |
aattgaaaaagtggtatctctccatcaatatcagattatctctgtacttcggccatacctacaacatttt |
179 |
Q |
| |
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|| ||||| |||||||| ||||||||||||||||| | | | | |||| |||| ||||||||||||| |
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| T |
50172273 |
aagcaaaaaaatggtatctttccatcaatatcagattgtttttatgcttcatccatgcctacaacatttt |
50172342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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