View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17896_high_2 (Length: 570)

Name: NF17896_high_2
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17896_high_2
NF17896_high_2
[»] chr6 (2 HSPs)
chr6 (12-290)||(34691008-34691286)
chr6 (355-559)||(34690740-34690944)
[»] chr2 (13 HSPs)
chr2 (12-290)||(26988933-26989211)
chr2 (355-559)||(26988664-26988868)
chr2 (411-552)||(27076447-27076588)
chr2 (394-543)||(21432748-21432896)
chr2 (411-552)||(27027989-27028130)
chr2 (413-543)||(27099551-27099681)
chr2 (417-528)||(27151572-27151687)
chr2 (12-104)||(27076064-27076156)
chr2 (12-83)||(21433246-21433317)
chr2 (12-83)||(27152026-27152097)
chr2 (155-235)||(27028148-27028237)
chr2 (147-187)||(27076180-27076220)
chr2 (187-239)||(27076251-27076303)
[»] chr4 (1 HSPs)
chr4 (451-525)||(50173806-50173880)


Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 12 - 290
Target Start/End: Complemental strand, 34691286 - 34691008
Alignment:
Q  12 atgtgatgatgtgcagcatggtacttgcaaatgccgaataatataatgatatctgtcttttagcaaccaaagaacacgaacgaatgtttattctgcaaat 111  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34691286 atgtgatgatgtgcagcatggtacttgcaaatgcagaataatacaatgatatctgtcttttagcaaccaaagaacacgaacgaatgtttattctgcaaat 34691187  T
Q  112 ttttcagtgtaatcgaaaacaaagaatgcataaatcttgttgtaagctttccaaaagcatttaacagacacaactgcaaaccaagaaagctgtataatgc 211  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34691186 ttttcagtgtaatcgaaaacaaagaatgcataaagcttgttgtaagctttccaaaagcatttaacagacacaactgcaaaccaagaaagctgtataatgc 34691087  T
Q  212 cagcattttagcctttcagcaaaagatgnnnnnnntaataagatcgaggtctcatgctctatgacagtaagttacaatg 290  Q
    ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  34691086 cagcattttagcctttcagcaaaagatgaaaaaaataataagatcgaggtctcatgctctatgacagtaagttacaatg 34691008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 355 - 559
Target Start/End: Complemental strand, 34690944 - 34690740
Alignment:
Q  355 ttctaataaatactaataatgacaattacgaaaagaaaaggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttctt 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34690944 ttctaataaatactaataatgacaattacgaaaagaaaaggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttctt 34690845  T
Q  455 ctgggctcaaacgatgaagggaagtggtatttagcagtgtgtgatctaagtcaagaaccaagcaaagctttctacgatttaataaattcttcacgtctct 554  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34690844 ctgggctcaaacgatgaagggaagtggtatttagcagtgtgtgatctaagtcaagaaccaagcaaagctttctacgatttaataaattcttcacgtctct 34690745  T
Q  555 gctgc 559  Q
    |||||    
T  34690744 gctgc 34690740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 12 - 290
Target Start/End: Complemental strand, 26989211 - 26988933
Alignment:
Q  12 atgtgatgatgtgcagcatggtacttgcaaatgccgaataatataatgatatctgtcttttagcaaccaaagaacacgaacgaatgtttattctgcaaat 111  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26989211 atgtgatgatgtgcagcatggtacttgcaaatgcagaataatacaatgatatctgtcttttagcaaccaaagaacacgaacgaatgtttattctgcaaat 26989112  T
Q  112 ttttcagtgtaatcgaaaacaaagaatgcataaatcttgttgtaagctttccaaaagcatttaacagacacaactgcaaaccaagaaagctgtataatgc 211  Q
    |||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26989111 ttttcagtgtaatcgaaaacaaagaatgcataaagcttgttgcaaactttccaaaagcatttaacagacacaactgcaaaccaagaaagctgtataatgc 26989012  T
Q  212 cagcattttagcctttcagcaaaagatgnnnnnnntaataagatcgaggtctcatgctctatgacagtaagttacaatg 290  Q
    ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  26989011 cagcattttagcctttcagcaaaagatgaaaaaaataataagatcgaggtctcatgctctatgacagtaagttacaatg 26988933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 355 - 559
Target Start/End: Complemental strand, 26988868 - 26988664
Alignment:
Q  355 ttctaataaatactaataatgacaattacgaaaagaaaaggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttctt 454  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26988868 ttctaataaatactaattatgacaattacgaaaagaaaaggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttctt 26988769  T
Q  455 ctgggctcaaacgatgaagggaagtggtatttagcagtgtgtgatctaagtcaagaaccaagcaaagctttctacgatttaataaattcttcacgtctct 554  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26988768 ctgggctcaaacgatgaagggaagtggtatttagcagtgtgtgatctaagtctagaaccaagcaaagctttctacgatttaataaattcttcacgtctct 26988669  T
Q  555 gctgc 559  Q
    |||||    
T  26988668 gctgc 26988664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 411 - 552
Target Start/End: Original strand, 27076447 - 27076588
Alignment:
Q  411 attaccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacgatgaagggaagtggtatttagcagtgtgtgatctaagtcaaga 510  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  27076447 attaccttctagagaatctgtatgagtttttaaatgcatttcttctgggctcaaacgatgaagggaagtggtatttagcagtgtgtgatctaggtctaga 27076546  T
Q  511 accaagcaaagctttctacgatttaataaattcttcacgtct 552  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  27076547 accaaacaaagctttctacgatttaataaattcttcacgtct 27076588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 394 - 543
Target Start/End: Complemental strand, 21432896 - 21432748
Alignment:
Q  394 ggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacgatgaagggaagtggtatttagcagtg 493  Q
    ||||||| |||||||| || |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21432896 ggtgcattggttggcacat-accttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacgatgaagggaagtggtatttagcagtg 21432798  T
Q  494 tgtgatctaagtcaagaaccaagcaaagctttctacgatttaataaattc 543  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  21432797 tgtgatctaagtccagaaccaagcaaagctttctacggtttaataaattc 21432748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 411 - 552
Target Start/End: Complemental strand, 27028130 - 27027989
Alignment:
Q  411 attaccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacgatgaagggaagtggtatttagcagtgtgtgatctaagtcaaga 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||  ||||||||||||||||||||||||||| ||| |||    
T  27028130 attaccttctagagaatctgtatgggtttttaaatgcatttcttctgagctcaaacggtaaagaaaagtggtatttagcagtgtgtgatctaggtccaga 27028031  T
Q  511 accaagcaaagctttctacgatttaataaattcttcacgtct 552  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  27028030 accaaacaaagctttctacgatttaataaattcttcacgtct 27027989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 413 - 543
Target Start/End: Original strand, 27099551 - 27099681
Alignment:
Q  413 taccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacgatgaagggaagtggtatttagcagtgtgtgatctaagtcaagaac 512  Q
    ||||||||||||||||||||| |||||| || |||||||||| |||| ||||| ||||||||||||||||||||| | |||||||||||||||| |||||    
T  27099551 taccttctagagaatctgtataggttttcaattgcatttcttttgggttcaaaggatgaagggaagtggtatttatctgtgtgtgatctaagtccagaac 27099650  T
Q  513 caagcaaagctttctacgatttaataaattc 543  Q
    |||||||||||||||||| ||||||||||||    
T  27099651 caagcaaagctttctacggtttaataaattc 27099681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 417 - 528
Target Start/End: Complemental strand, 27151687 - 27151572
Alignment:
Q  417 ttctagagaatctgtatgggtttttaaatgcatttcttctggg-ctcaaacgatgaagggaagtggtatttagcagtgtgtgatctaagtc---aagaac 512  Q
    ||||||||||||||||| | ||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||| | |   || |||    
T  27151687 ttctagagaatctgtatagatttttaaatgcatttcttctggggctcaaatgatgaaggggagtggtatttagcagtgtgtgatctaggcccagaataac 27151588  T
Q  513 caagcaaagctttcta 528  Q
    ||||||||||||||||    
T  27151587 caagcaaagctttcta 27151572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 27076064 - 27076156
Alignment:
Q  12 atgtgatgatgtgcagcatggtacttgcaaatgccgaataatataatgatatctgtcttttagcaaccaaagaacacgaacgaatgtttattc 104  Q
    ||||||||||||||||| ||||| |||||||||| |||||||  |||||||| |||||||||||||||||| |||| |||| | |||||||||    
T  27076064 atgtgatgatgtgcagcttggtagttgcaaatgcagaataattcaatgatatatgtcttttagcaaccaaataacatgaacaactgtttattc 27076156  T

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Target: chr2; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 21433317 - 21433246
Alignment:
Q  12 atgtgatgatgtgcagcatggtacttgcaaatgccgaataatataatgatatctgtcttttagcaaccaaag 83  Q
    ||||||||||||| ||  |||||||||||| ||| |||||||| ||||||||||||||||||||||| ||||    
T  21433317 atgtgatgatgtgtaggttggtacttgcaattgcagaataatacaatgatatctgtcttttagcaacaaaag 21433246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 27152097 - 27152026
Alignment:
Q  12 atgtgatgatgtgcagcatggtacttgcaaatgccgaataatataatgatatctgtcttttagcaaccaaag 83  Q
    ||||||||||||||||  |||||||||||| ||| |||||||| ||||||||||||||||||| ||| ||||    
T  27152097 atgtgatgatgtgcaggttggtacttgcaattgcagaataatacaatgatatctgtcttttagtaacaaaag 27152026  T

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Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 27028237 - 27028148
Alignment:
Q  155 aagctttccaaaagcatttaacagacacaact---------gcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaa 235  Q
    ||||||||||||||||||||||| ||| ||||         ||||||||||||||||||||||||||||||||| |  ||||||||||||    
T  27028237 aagctttccaaaagcatttaacaaacataactaagacactagcaaaccaagaaagctgtataatgccagcatttcacgctttcagcaaaa 27028148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 27076180 - 27076220
Alignment:
Q  147 cttgttgtaagctttccaaaagcatttaacagacacaactg 187  Q
    ||||||| ||||||||||||||||||||||| |||||||||    
T  27076180 cttgttgcaagctttccaaaagcatttaacaaacacaactg 27076220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 27076251 - 27076303
Alignment:
Q  187 gcaaaccaagaaagctgtataatgccagcattttagcctttcagcaaaagatg 239  Q
    |||||||||||||||||||||||||| || ||| |  ||||||||||||||||    
T  27076251 gcaaaccaagaaagctgtataatgcctgcgtttcacgctttcagcaaaagatg 27076303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 525
Target Start/End: Original strand, 50173806 - 50173880
Alignment:
Q  451 tcttctgggctcaaacgatgaagggaagtggtatttagcagtgtgtgatctaagtcaagaaccaagcaaagcttt 525  Q
    ||||||| ||||||| ||  ||||  |||||||||||||| ||| ||||||| ||||||||| ||| ||||||||    
T  50173806 tcttctgagctcaaatgaccaaggatagtggtatttagcaatgtatgatctaggtcaagaactaagtaaagcttt 50173880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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