View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17896_high_21 (Length: 318)

Name: NF17896_high_21
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17896_high_21
NF17896_high_21
[»] chr2 (1 HSPs)
chr2 (1-296)||(3110433-3110727)
[»] chr7 (2 HSPs)
chr7 (90-135)||(32888971-32889016)
chr7 (100-152)||(1791416-1791468)
[»] chr3 (3 HSPs)
chr3 (91-135)||(8936736-8936780)
chr3 (100-135)||(1138433-1138468)
chr3 (100-141)||(38692426-38692467)
[»] chr1 (2 HSPs)
chr1 (91-135)||(6025952-6025996)
chr1 (102-135)||(1118943-1118976)
[»] chr6 (2 HSPs)
chr6 (85-135)||(2732971-2733021)
chr6 (102-135)||(2730831-2730864)
[»] chr8 (2 HSPs)
chr8 (91-135)||(26445499-26445543)
chr8 (90-118)||(34620045-34620073)
[»] chr4 (1 HSPs)
chr4 (99-135)||(47789198-47789234)


Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 3110433 - 3110727
Alignment:
Q  1 attagtttaaggaaaatttggttgatctgtaatagtgttgtccatcgtagattgcggaaaatagcggtttattcaaaacacttttagtattatagcgccg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3110433 attagtttaaggaaaatttggttgatctgtaatagtgttgtccatcgtagattgcggaaaatagcggtttattcaaaacacttt-agtattatagcgccg 3110531  T
Q  101 ctatagccactatttgacaacgctttgtactaaattgtgtaatgcccaacaacaattgtttgttcaaattctgccatgttgtaacactattgccgccatc 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3110532 ctatagccactatttgacaacgctttgtactaaatagtgtaatgcccaacaacaattgtttgttcaaattctgccatgttgtaacactattgccgccatc 3110631  T
Q  201 agaatcactcttagttttcattctgcaatagtcatacagtgatttcgatagcagtatcttatttcataagcaaacgagtcttacctgaactgaact 296  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3110632 agaatcactcttagttttcattctgcaatattcatacagtgatttcgatagcagtatcttatttcataagcaaacgagtcttacctgaactgaact 3110727  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 32889016 - 32888971
Alignment:
Q  90 ttatagcgccgctatagccactatttgacaacgctttgtactaaat 135  Q
    |||||||||||| ||||||||||||||||||  |||||||||||||    
T  32889016 ttatagcgccgcaatagccactatttgacaatactttgtactaaat 32888971  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 1791416 - 1791468
Alignment:
Q  100 gctatagccactatttgacaacgctttgtactaaattgtgtaatgcccaacaa 152  Q
    ||||||||| |||||||||||  || |||||||||||||| ||||| ||||||    
T  1791416 gctatagccgctatttgacaatactctgtactaaattgtgaaatgcacaacaa 1791468  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 8936736 - 8936780
Alignment:
Q  91 tatagcgccgctatagccactatttgacaacgctttgtactaaat 135  Q
    ||||||||||||||||||| ||||||||||| |||||| ||||||    
T  8936736 tatagcgccgctatagccattatttgacaacactttgttctaaat 8936780  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 135
Target Start/End: Original strand, 1138433 - 1138468
Alignment:
Q  100 gctatagccactatttgacaacgctttgtactaaat 135  Q
    |||||||||||||||||||||| |||||||||||||    
T  1138433 gctatagccactatttgacaactctttgtactaaat 1138468  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 38692426 - 38692467
Alignment:
Q  100 gctatagccactatttgacaacgctttgtactaaattgtgta 141  Q
    ||||||||| |||||||||||| ||||||||||||| |||||    
T  38692426 gctatagccgctatttgacaacactttgtactaaatcgtgta 38692467  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 6025952 - 6025996
Alignment:
Q  91 tatagcgccgctatagccactatttgacaacgctttgtactaaat 135  Q
    |||||||| ||||||||||||||||||||||  ||||||||||||    
T  6025952 tatagcgctgctatagccactatttgacaacattttgtactaaat 6025996  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 1118976 - 1118943
Alignment:
Q  102 tatagccactatttgacaacgctttgtactaaat 135  Q
    |||||||||||||||||||| |||||||||||||    
T  1118976 tatagccactatttgacaacactttgtactaaat 1118943  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 2733021 - 2732971
Alignment:
Q  85 tagtattatagcgccgctatagccactatttgacaacgctttgtactaaat 135  Q
    ||||||||||||||| |||||||  ||||||||||||  ||||||||||||    
T  2733021 tagtattatagcgcctctatagctgctatttgacaacattttgtactaaat 2732971  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 2730831 - 2730864
Alignment:
Q  102 tatagccactatttgacaacgctttgtactaaat 135  Q
    |||||||||||||||||||| |||||||||||||    
T  2730831 tatagccactatttgacaacactttgtactaaat 2730864  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 26445499 - 26445543
Alignment:
Q  91 tatagcgccgctatagccactatttgacaacgctttgtactaaat 135  Q
    ||||||||| ||||| |  ||||||||||||||||||||||||||    
T  26445499 tatagcgccactataactgctatttgacaacgctttgtactaaat 26445543  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 118
Target Start/End: Complemental strand, 34620073 - 34620045
Alignment:
Q  90 ttatagcgccgctatagccactatttgac 118  Q
    |||||||||||||||||||||||||||||    
T  34620073 ttatagcgccgctatagccactatttgac 34620045  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 47789234 - 47789198
Alignment:
Q  99 cgctatagccactatttgacaacgctttgtactaaat 135  Q
    |||||||||||||||||||||||  ||||||||||||    
T  47789234 cgctatagccactatttgacaacagtttgtactaaat 47789198  T

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