View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17896_high_27 (Length: 278)
Name: NF17896_high_27
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17896_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 6177376 - 6177114
Alignment:
| Q |
1 |
taatccttcaagtgttggtaattctctggatcataaaatctccaatagtaatcaatattaatctatccagcactggcgcttcaaattgaagacatgtctg |
100 |
Q |
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| T |
6177376 |
taatccttcaagtgttggtaattctctggatcataaaatctccaatagtaatcaatattaatctatctagcactggcgcttcaaattgaagacatgtctg |
6177277 |
T |
|
| Q |
101 |
gtgtccgacaagtgtcaatgtaagccgccgagagaagtatttagaatcaattactcacatcttctcaaattagtttcggtgccttgtaagacactggcgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6177276 |
gtgtccgacaagtgtcaatgtaagccgccgagagaagtatttagaatcaattactcacatcttctcaaattagtttcggtgccttgtaagacactggcgt |
6177177 |
T |
|
| Q |
201 |
atgtgtcaatgcttcataaatattcagtattgaatattgatgatgagctgagaatagggtggt |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6177176 |
atgtgtcaatgcttcataaatattcagtattgaatattgatgatgggctgagaatagggtggt |
6177114 |
T |
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