View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17896_high_29 (Length: 269)

Name: NF17896_high_29
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17896_high_29
NF17896_high_29
[»] chr5 (3 HSPs)
chr5 (16-259)||(25354873-25355116)
chr5 (116-259)||(25348859-25349002)
chr5 (116-218)||(25347354-25347456)


Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 25355116 - 25354873
Alignment:
Q  16 gtaacattatgtgtattagaattcaaacgcggatggttagtcctgcatcgattttaactttttcgcattttctatagctaaattgatgcattatttactt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25355116 gtaacattatgtgtattagaattcaaacgcggatggttagtcctgcatcgattttaactttttctcattttctatagctaaattgatgcattatttactt 25355017  T
Q  116 tacaggcagatcaccttaggcaacaaactctgttatacatgtcacgcatcttatcgattggtcaagctgctcaaggcttgctggctatgggggaatactt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25355016 tacaggcagatcaccttaggcaacaaactctgttatacatgtcacgcatcttatcgattggtcaagctgctcaaggcttgctggctatgggggaatactt 25354917  T
Q  216 tcatcgtcttcgcactcttagttcattgtggactgctcgttcat 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  25354916 tcatcgtcttcgcactcttagttcattgtggactgctcgttcat 25354873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 116 - 259
Target Start/End: Complemental strand, 25349002 - 25348859
Alignment:
Q  116 tacaggcagatcaccttaggcaacaaactctgttatacatgtcacgcatcttatcgattggtcaagctgctcaaggcttgctggctatgggggaatactt 215  Q
    |||||||||||||||| ||||||||||||||| | |||||||| || |||||  | ||||  |||||||||||||||||||||||||||||||| |||||    
T  25349002 tacaggcagatcacctcaggcaacaaactctggtgtacatgtctcgtatcttgacaattgtgcaagctgctcaaggcttgctggctatgggggattactt 25348903  T
Q  216 tcatcgtcttcgcactcttagttcattgtggactgctcgttcat 259  Q
    ||| ||||||||||||  |||||| ||||||||| |||||||||    
T  25348902 tcaccgtcttcgcacttgtagttctttgtggacttctcgttcat 25348859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 218
Target Start/End: Complemental strand, 25347456 - 25347354
Alignment:
Q  116 tacaggcagatcaccttaggcaacaaactctgttatacatgtcacgcatcttatcgattggtcaagctgctcaaggcttgctggctatgggggaatactt 215  Q
    ||||||||||||||||||||||| |||||||| |  | ||||| | |||| || | ||| | ||||| |||||||| ||  |||||||||||| ||||||    
T  25347456 tacaggcagatcaccttaggcaagaaactctggtgcagatgtctcacatcctaacaattaggcaagcagctcaaggttttttggctatggggggatactt 25347357  T
Q  216 tca 218  Q
    |||    
T  25347356 tca 25347354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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