View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17896_high_32 (Length: 263)
Name: NF17896_high_32
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17896_high_32 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 49438729 - 49438965
Alignment:
| Q |
18 |
tgtaagtgaaaggaaagagacgaaggctctcaacaccatggtgtacaacatggtcaacccatttgaccacactgggaaagccacgggatccaagagaaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49438729 |
tgtaagtgaaaggaaagagacgaaggctctcaacaccatggtgtacaacatgatcaacccatttgaccacactgggaaagccacgggatccaagagaaga |
49438828 |
T |
|
| Q |
118 |
actaccatatccaaccttgaggtgaaaactcttgatggaatctagcttgagcagaatggagtgcacaaactcgttaaagctatcaagggcatattgagta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49438829 |
actaccatatccaaccttgaggtgaaaactcttgatggaatctagcttgagcagaatggagtacacaaactcgttaaagctatcaagggcatattgagta |
49438928 |
T |
|
| Q |
218 |
ttcaatgttatttcctcgtaatactctccatattctt |
254 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
|
|
| T |
49438929 |
ttcaatgttatttcctcgcaatactctccatattctt |
49438965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 197
Target Start/End: Original strand, 49434912 - 49435065
Alignment:
| Q |
44 |
ctctcaacaccatggtgtacaacatggtcaacccatttgaccacactgggaaagccacgggatccaagagaagaactaccatatccaaccttgaggtgaa |
143 |
Q |
| |
|
||||||||||| | | ||||||||||| | |||||| || || || ||||||||| || || ||||| ||||| | ||||||||||||||| | |
|
|
| T |
49434912 |
ctctcaacaccgcgttttacaacatggttgagccatttaactacgctaggaaagccaaggtatgcaagatcagaaccattatatccaaccttgagccaga |
49435011 |
T |
|
| Q |
144 |
aactcttgatggaatctagcttgagcagaatggagtgcacaaactcgttaaagc |
197 |
Q |
| |
|
|||||||||||||||||||||||| || || |||| |||||||||||| |||| |
|
|
| T |
49435012 |
aactcttgatggaatctagcttgaacaaaacagagtacacaaactcgttgaagc |
49435065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University