View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17896_high_36 (Length: 233)
Name: NF17896_high_36
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17896_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 43618596 - 43618789
Alignment:
| Q |
16 |
caaatttgtcttagattaaattggcaaaaagatattgcttttgattatggtttatcttatgtttttacttacttaggggaactgatattgtagagtccat |
115 |
Q |
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| T |
43618596 |
caaatttgtcttagattaaattggcaaaaatatattgcttttgattatggtttatcttatgtttttacttacttaggggaactgatattgtagagtccat |
43618695 |
T |
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| Q |
116 |
acaagtaagaaaagtgcataacctgtaaaatgaaaactgtattagaaatgaaaatgatgagtgcaagaaactaatgcttgtaaattagtaacta |
209 |
Q |
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| T |
43618696 |
acaagtaagaaaagtgcataacctgtaaaatgaaaactgtattagaaatgaaaatgatgattgcaagaaactaatgcttctaaattagtaacta |
43618789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 43611581 - 43611793
Alignment:
| Q |
16 |
caaatttgtcttagattaaattggcaaaaagatattgcttttgattatggtttatcttatgtttttacttacttaggggaactgatattgtagagtccat |
115 |
Q |
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| T |
43611581 |
caaatttgtcttagattaaattggcaaaaagatattgctttggattatggtttattttatgtttttacttacttaaaggaactgatattgtagagtccat |
43611680 |
T |
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| Q |
116 |
ac-----aagtaagaaaagtgcataacctgtaaaatgaaaactgtattagaaatgaaaatgatgagtgcaagaaactaatgcttgtaaattagtaactat |
210 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43611681 |
acaatacaagtaagaaaagtgcataacctgtaaaatgaaaactgtattagaaatgaaaatgatgagtgcaagaaactaatgcttctaaattagtaactat |
43611780 |
T |
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| Q |
211 |
aacctatgctact |
223 |
Q |
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|| ||||| |||| |
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| T |
43611781 |
aatctatgttact |
43611793 |
T |
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