View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17896_high_40 (Length: 226)
Name: NF17896_high_40
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17896_high_40 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 39088946 - 39088720
Alignment:
| Q |
13 |
aatattaagatgaagggtctccttaaaggcctgagaatcatttctcagatatttggtatgttttttaacaagtacagtgcactaatgcctgttttctaac |
112 |
Q |
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| T |
39088946 |
aatattaagatgaagggtctccttaaaggcctgagaatcatttctcagatatttggtatgttttttaacaagtacagtgcactaatgcctgttttctaac |
39088847 |
T |
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| Q |
113 |
aagttattttaccattctcatacatttatac-------------taatatatccactttgtaaaagataatgaaaaagaagcagaaattgagattggtca |
199 |
Q |
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| T |
39088846 |
aagttattttaccattctcatacatttatacttatacaactaattaatatatccactttgtaaaagataatgaaaaagaagcagaaattgagattggtca |
39088747 |
T |
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| Q |
200 |
ccccacagatgtaaagcatgtggcaca |
226 |
Q |
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| T |
39088746 |
ccccacagatgtaaagcatgtggcaca |
39088720 |
T |
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