View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17896_high_44 (Length: 204)
Name: NF17896_high_44
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17896_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 21242697 - 21242507
Alignment:
| Q |
1 |
tataaagtttgttatgtagagaatgatgagaacagctaactagtcaaactataactaaccaatctaactaactttgtatataatattacccgaattgatg |
100 |
Q |
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| T |
21242697 |
tataaagtttgttatgtagagaatgatgagaacagctaactagtcaaactataactaaccaatctaactaactttgtatataatattacccgaattaatg |
21242598 |
T |
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| Q |
101 |
ataattgctggaaagttgaaattgaaactcttcactttgctccataattcagggacagtgatgactagtttaggattggaatccttgattt |
191 |
Q |
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| T |
21242597 |
ataattgctggaaagttgaaattgaaactcttcactttgctccataattcagggacagtgatgactagtttaggattggaatccttgattt |
21242507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 21258473 - 21258411
Alignment:
| Q |
1 |
tataaagtttgttatgtagagaatgatgagaacagctaactagtcaaactataactaaccaat |
63 |
Q |
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||||||||||||||| ||| |||||||||| ||||||||||||| |||||| |||| ||||| |
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| T |
21258473 |
tataaagtttgttatatagcgaatgatgagtacagctaactagtgtaactatcactatccaat |
21258411 |
T |
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