View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17896_high_8 (Length: 465)
Name: NF17896_high_8
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17896_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 14 - 451
Target Start/End: Complemental strand, 30770380 - 30769946
Alignment:
| Q |
14 |
gaattggtggcaaattctccattgaaggagtcaaagatgaagatgatagactattttctagcataggtgaattaggtgttgaattcacagcattaacatt |
113 |
Q |
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| T |
30770380 |
gaattggtggcaaattctccattgaaggagtcaaagatgatgatgataaactgttttctagcataggtgaattaggtgttgaattcacaacattaacatt |
30770281 |
T |
|
| Q |
114 |
atcaaaaacattcttaaccttattgttgttgttttcaagcagagtcagtgattctacttgagattctaagttattgcttgaatcaccactagcaggaaca |
213 |
Q |
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| T |
30770280 |
atcaagaacattcttaaccttattgttgttgttttcaagcagagtcaatgattctacttgagattccaagttattgcttgaatcac---tagcaggaaca |
30770184 |
T |
|
| Q |
214 |
ttatcaagattcacaaaagaatctcctgcagaatctgacacacctcttgagagaatccctgagttgttgagtgcatcaacaaaccatgtctcagattttg |
313 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30770183 |
ctatcaagattcacaaaagaatctcctgctgaatctgacacacctcttgagagaatccctgagttgttgagtgcatcaacaaaccatgtctcagattttg |
30770084 |
T |
|
| Q |
314 |
catcatcaagaagtgatcccattgaaagtgtggactctggttttgtgaagaacaagaacactcttagtcttgatgatgaaggtttcatggtagaagatgc |
413 |
Q |
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| T |
30770083 |
catcatcaagaagtgatcccattgaaagtgtggtatctggttttgtgaagaacaaaaacactcttagtcttgatgatgaaggtttcattgtagaagatgc |
30769984 |
T |
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| Q |
414 |
agatgctatacgatcatattcttcaatcatgttatcaa |
451 |
Q |
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| T |
30769983 |
cgatgctatacgatcatattcttcaatcatgttatcaa |
30769946 |
T |
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