View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17896_low_11 (Length: 417)
Name: NF17896_low_11
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17896_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 13 - 406
Target Start/End: Complemental strand, 48877925 - 48877532
Alignment:
| Q |
13 |
aatatgtgaaatgttgtagcctcacaaccacaaccagatttggcaaaatgggcaggacctcctcttgaaaaattaaaatgtaacatcaatgtagctttta |
112 |
Q |
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| T |
48877925 |
aatatgtgaaatgttgtagccccacaaccgcaaccagatttgacaaaatgggcaggacctcctcttgaaaaattaaaatgtaacatcaatgtagctttta |
48877826 |
T |
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| Q |
113 |
tgaataacaaagtgggtatcagtatctgtcttagcgaccatcatgagaattttattaaagctaaaactacaaggtatgctcctgtgttattagtcaagga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48877825 |
tgaataacaaagtgggtatcagtatctgtcttagcgaccatcatgagaattttattaaagctaaaactacaaggtatgctcctgtgttattagtcaagga |
48877726 |
T |
|
| Q |
213 |
aggtgaagcaaatggtttattgcaagctatcaaatggacttcaaagttgggtttgaataatgttatttttgaattagatgcaaaattagtggtcgattct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48877725 |
aggtgaagcaaatggtttattgcaagctatcaaatggacttcaaagttgggtttgaataatgttatttttgaattagatgcaaaattagtggtcgattct |
48877626 |
T |
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| Q |
313 |
attaatcaaccttagtttggtttcattgtaatagattgtatgtccaaactcgtcagcagagttttctaggagataagctaatgtagcgtcccat |
406 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48877625 |
tttaataaaccttagtttggtttcattgtaatagattgtatgtccaaactcgtcagcagagttttctaggagataagctaatgtagtgtcccat |
48877532 |
T |
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