View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17896_low_12 (Length: 409)
Name: NF17896_low_12
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17896_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 32 - 397
Target Start/End: Complemental strand, 518117 - 517751
Alignment:
| Q |
32 |
aactaaataagcataatcttaaagagtaatgccaataacacactattattcgctgaaactcgcgtgagtctcgctaaatcaaatagatttcattttctat |
131 |
Q |
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| T |
518117 |
aactaaataagcataatca-aaagagtaatgccaataacacactattatt-gcagaaactcacgtgagtctcgctaaatcaaatcgatttcgtattctat |
518020 |
T |
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| Q |
132 |
ttggtgggacttatttccagaatgacgagaccaacctaaatttcaacaaataa---gaactatactcaaaaataatatattgctaacacttctctaagca |
228 |
Q |
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| T |
518019 |
ttggtgggacttatttccagtatgacgagaccaacctaaatttcaacaaataacaagaactatactaaaaaataatatattgctaacacttctccaagca |
517920 |
T |
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| Q |
229 |
aaatgagtgcttcttgcattgcactcttggaggagcattgaatacaaatttagaatagcctacttctgaaagaggctcttcctcatggtttttccttgca |
328 |
Q |
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| T |
517919 |
aaatgagtgcttcttgcattgcactcttggaggagcattgactacaaatttagaatagcccacttctgaaagaggctcttcctcatggtttttccttgca |
517820 |
T |
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| Q |
329 |
tggatctctaggtctatactttcttaagctacccatgttttagagctcccagacacatttcctttgcta |
397 |
Q |
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| T |
517819 |
tggatctcctggtcaatactttcttaagctacccaggtttttgaactcccagacacatttcctttgcta |
517751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 223 - 397
Target Start/End: Complemental strand, 531174 - 530999
Alignment:
| Q |
223 |
taagcaaaatgagtgcttcttgcattgcactcttggaggagcattgaatacaaatttagaatagcctacttctgaaagaggctcttcctcatggtttttc |
322 |
Q |
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| T |
531174 |
taagcaaaacgagtgcttccggcattgcactccccgaggagcattgaataataatttagaacagcccactccttaaggaggctcttcctcatggttttcc |
531075 |
T |
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| Q |
323 |
cttgcatggatctctaggtctatactttc-ttaagctacccatgttttagagctcccagacacatttcctttgcta |
397 |
Q |
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| T |
531074 |
catgcacggatctatatgtttatactttctttaagctacccaggtttttgagctcccagccacatttcctttgcta |
530999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 326329 - 326373
Alignment:
| Q |
223 |
taagcaaaatgagtgcttcttgcattgcactcttggaggagcatt |
267 |
Q |
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| T |
326329 |
taagcaaaacgagtgcttctggcattgcactcatggaggagcatt |
326373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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