View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17896_low_13 (Length: 405)

Name: NF17896_low_13
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17896_low_13
NF17896_low_13
[»] chr4 (2 HSPs)
chr4 (14-392)||(10252608-10252997)
chr4 (14-64)||(6356035-6356085)
[»] chr8 (3 HSPs)
chr8 (190-325)||(42689265-42689409)
chr8 (14-58)||(42689064-42689108)
chr8 (252-296)||(15717937-15717981)
[»] chr3 (5 HSPs)
chr3 (18-113)||(40737517-40737612)
chr3 (189-297)||(39507304-39507422)
chr3 (248-307)||(40737262-40737321)
chr3 (264-297)||(22222308-22222341)
chr3 (132-180)||(40737451-40737499)
[»] chr2 (4 HSPs)
chr2 (178-297)||(26625452-26625580)
chr2 (18-95)||(26625238-26625315)
chr2 (252-326)||(23480901-23480975)
chr2 (258-318)||(2454421-2454481)
[»] chr5 (3 HSPs)
chr5 (252-327)||(35101376-35101451)
chr5 (16-94)||(30787918-30787996)
chr5 (176-295)||(30787654-30787781)
[»] chr1 (4 HSPs)
chr1 (16-106)||(23912578-23912668)
chr1 (237-325)||(2884009-2884096)
chr1 (174-228)||(23912799-23912853)
chr1 (257-291)||(41038715-41038749)
[»] chr7 (1 HSPs)
chr7 (260-319)||(10337805-10337864)


Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 14 - 392
Target Start/End: Original strand, 10252608 - 10252997
Alignment:
Q  14 aaataattttatcagaaggcacattcttcatcataatgttcaactttgtgtaggcggttgtggtataatgtaagatatagacaatctatttctctc--gt 111  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||  ||    
T  10252608 aaataattttatcagaaggcacattcttaatcataatgttcaactttgtgtaggcttttgtggtataatgtaagatatagacgatctatttctctcttgt 10252707  T
Q  112 gannnnnnnnnnnnnnnnnagattggtatctataattggctcggctttactatggtacatccagaacatctgaattacttttcaactcatatggttaact 211  Q
    ||                 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  10252708 gatttttttgaaattttttagattggtatctataattggctcggctttactatggtacatccagaacatccgaataacttttcaactcatatggttaact 10252807  T
Q  212 tgtgtttgggtgatttgatgggaaagaatt---------tttcgcaatcaagaagaatcgttacaacatcttcttgacaaaattaagcttcaatcctact 302  Q
    |||||||||||||||||||||||||||| |         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10252808 tgtgtttgggtgatttgatgggaaagaaatgcttgaagttttcgcaatcaagaagaatcgttacaacatcttcttgacaaaattaagcttcaatcctatt 10252907  T
Q  303 agtggttgaaagcgaatagaattttcgctcaattttaataaagtggatactatatgagattttcgcccaattttttatgagtatggactg 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10252908 agtggttgaaagcgaatagaattttcgctcaattttaataaagtggatactatatgagattttcgctcaattttttatgagtatggactg 10252997  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 6356035 - 6356085
Alignment:
Q  14 aaataattttatcagaaggcacattcttcatcataatgttcaactttgtgt 64  Q
    ||||||||| |||||||| || ||||||||| |||||| ||||||||||||    
T  6356035 aaataatttaatcagaagacatattcttcattataatgctcaactttgtgt 6356085  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 190 - 325
Target Start/End: Original strand, 42689265 - 42689409
Alignment:
Q  190 ttttcaactcatatggttaacttgtgtttgggtgatttgatgggaaagaa---------tttttcgcaatcaagaagaatcgttacaacatcttcttgac 280  Q
    |||||||||| || | ||||||||||||||||||||||| || |||||||         ||||||||||||||||||||| | | ||||| |||||||||    
T  42689265 ttttcaactcctacgattaacttgtgtttgggtgatttggtgtgaaagaaatgctcaaatttttcgcaatcaagaagaattgcttcaacaacttcttgac 42689364  T
Q  281 aaaattaagcttcaatcctactagtggttgaaagcgaatagaatt 325  Q
    ||||||||||||||||| ||||| ||  |||||| ||||| ||||    
T  42689365 aaaattaagcttcaatcttactaatgactgaaagtgaataaaatt 42689409  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 42689064 - 42689108
Alignment:
Q  14 aaataattttatcagaaggcacattcttcatcataatgttcaact 58  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  42689064 aaataatttaatgagaaggcacattcttcatcataatgttcaact 42689108  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 15717937 - 15717981
Alignment:
Q  252 aagaagaatcgttacaacatcttcttgacaaaattaagcttcaat 296  Q
    |||||||| | || |||| ||||||||||||||||||||||||||    
T  15717937 aagaagaaacatttcaacttcttcttgacaaaattaagcttcaat 15717981  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 40737612 - 40737517
Alignment:
Q  18 aattttatcagaaggcacattcttcatcataatgttcaactttgtgtaggcggttgtggtataatgtaagatatagacaatctatttctctcgtga 113  Q
    ||||| || ||||||||||||||||||||||||| |||||||||||| || || | || | ||||| ||||||||||| |||||||||||||||||    
T  40737612 aatttaataagaaggcacattcttcatcataatgctcaactttgtgtgggtggctatgatgtaatggaagatatagaccatctatttctctcgtga 40737517  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 297
Target Start/End: Complemental strand, 39507422 - 39507304
Alignment:
Q  189 cttttcaactcatatggttaacttgtgtttgggtgatttgatgggaaagaat----------ttttcgcaatcaagaagaatcgttacaacatcttcttg 278  Q
    |||| ||||||||||||||||||||||  ||||||||||| || |||| |||          ||||| ||||||| |||||||||||| ||| |||||||    
T  39507422 ctttccaactcatatggttaacttgtgcgtgggtgatttggtgtgaaaaaatatactcggatttttcacaatcaataagaatcgttaccacaacttcttg 39507323  T
Q  279 acaaaattaagcttcaatc 297  Q
    |||||||||| || |||||    
T  39507322 acaaaattaaactacaatc 39507304  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 40737321 - 40737262
Alignment:
Q  248 aatcaagaagaatcgttacaacatcttcttgacaaaattaagcttcaatcctactagtgg 307  Q
    ||||||||||||||| |||||||  || |||||||||||||||||||||| |||| ||||    
T  40737321 aatcaagaagaatcgatacaacaattttttgacaaaattaagcttcaatcttacttgtgg 40737262  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 297
Target Start/End: Original strand, 22222308 - 22222341
Alignment:
Q  264 tacaacatcttcttgacaaaattaagcttcaatc 297  Q
    ||||||||||||||||||||||||| ||||||||    
T  22222308 tacaacatcttcttgacaaaattaaacttcaatc 22222341  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 40737499 - 40737451
Alignment:
Q  132 gattggtatctataattggctcggctttactatggtacatccagaacat 180  Q
    ||||||||||| ||||||||| |||||||||| ||| |||||| |||||    
T  40737499 gattggtatctctaattggcttggctttactacggtgcatccaaaacat 40737451  T

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Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 178 - 297
Target Start/End: Original strand, 26625452 - 26625580
Alignment:
Q  178 catctgaattacttttcaactcatatggttaacttgtgtttgggtgatttgatgggaaagaa---------tttttcgcaatcaagaagaatcgttacaa 268  Q
    ||||||||| ||||||||||||||||||||| ||||||| ||  ||||||| || |||||||         |||||||||||||||| ||||| ||||||    
T  26625452 catctgaatgacttttcaactcatatggttagcttgtgtgtgaatgatttggtgtgaaagaaatgctcggatttttcgcaatcaagatgaatcattacaa 26625551  T
Q  269 catcttcttgacaaaattaagcttcaatc 297  Q
    || || ||||||||||||||||| |||||    
T  26625552 caactgcttgacaaaattaagctacaatc 26625580  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 26625238 - 26625315
Alignment:
Q  18 aattttatcagaaggcacattcttcatcataatgttcaactttgtgtaggcggttgtggtataatgtaagatatagac 95  Q
    ||||| |||| |||||| |||||||||||||||| |||||||||||| |  ||||||||||||||| |||||||||||    
T  26625238 aatttaatcataaggcatattcttcatcataatgctcaactttgtgttgctggttgtggtataatggaagatatagac 26625315  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 326
Target Start/End: Original strand, 23480901 - 23480975
Alignment:
Q  252 aagaagaatcgttacaacatcttcttgacaaaattaagcttcaatcctactagtggttgaaagcgaatagaattt 326  Q
    |||||||| | || |||||||||||||||||||||||||||||||| || |||||| | ||||| |||| |||||    
T  23480901 aagaagaaacatttcaacatcttcttgacaaaattaagcttcaatcttattagtggctaaaagcaaatataattt 23480975  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 318
Target Start/End: Original strand, 2454421 - 2454481
Alignment:
Q  258 aatcgttacaacatcttcttgacaaaattaagcttcaatcctactagtggttgaaagcgaa 318  Q
    ||||||||||||| ||||| || |||||||| || ||||| ||||  ||||||||||||||    
T  2454421 aatcgttacaacaacttctcgataaaattaaactacaatcttactgatggttgaaagcgaa 2454481  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 252 - 327
Target Start/End: Complemental strand, 35101451 - 35101376
Alignment:
Q  252 aagaagaatcgttacaacatcttcttgacaaaattaagcttcaatcctactagtggttgaaagcgaatagaatttt 327  Q
    |||||||| |||| |||||||||||||||||||||||||||||||| || |  ||||||||||| |||||||||||    
T  35101451 aagaagaaacgtttcaacatcttcttgacaaaattaagcttcaatcttattgatggttgaaagcaaatagaatttt 35101376  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 30787996 - 30787918
Alignment:
Q  16 ataattttatcagaaggcacattcttcatcataatgttcaactttgtgtaggcggttgtggtataatgtaagatataga 94  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||| ||  | |||||||||||| ||||| ||||    
T  30787996 ataatttaatcagaaggcacattcttcattataatgttcaactttgtgtgggtagctgtggtataatggaagatttaga 30787918  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 295
Target Start/End: Complemental strand, 30787781 - 30787654
Alignment:
Q  176 aacatctgaattacttttcaactcatatggttaacttgtgtttgggtgatttgatgggaaa--------gaatttttcgcaatcaagaagaatcgttaca 267  Q
    |||||| |||| ||||||||||||||||||||| ||||||||||  | ||||| ||  |||        |||||||||||||||||||||||||| | ||    
T  30787781 aacatccgaataacttttcaactcatatggttagcttgtgtttgaataatttggtgtaaaaaaatgcttgaatttttcgcaatcaagaagaatcgcttca 30787682  T
Q  268 acatcttcttgacaaaattaagcttcaa 295  Q
    ||| ||||||  ||||||||||||||||    
T  30787681 acaacttctttgcaaaattaagcttcaa 30787654  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 23912578 - 23912668
Alignment:
Q  16 ataattttatcagaaggcacattcttcatcataatgttcaactttgtgtaggcggttgtggtataatgtaagatatagacaatctatttct 106  Q
    ||||||| || ||||||||||||||||||||||||| ||||||||||||  | ||||||| ||||||| |||||||| || || |||||||    
T  23912578 ataatttaattagaaggcacattcttcatcataatgctcaactttgtgtgtgtggttgtgttataatggaagatataaaccatatatttct 23912668  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 237 - 325
Target Start/End: Original strand, 2884009 - 2884096
Alignment:
Q  237 gaatttttcgcaatcaagaagaatcgttacaacatcttcttgacaaaattaagcttcaatcctactagtggttgaaagcgaatagaatt 325  Q
    |||||||||||||||||||| ||||||||||||| ||| | |||||||||||||||||||  |||| |||| |||||||| ||| ||||    
T  2884009 gaatttttcgcaatcaagaataatcgttacaacaactt-tggacaaaattaagcttcaatattactggtggctgaaagcgcataaaatt 2884096  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 23912799 - 23912853
Alignment:
Q  174 agaacatctgaattacttttcaactcatatggttaacttgtgtttgggtgatttg 228  Q
    |||||||| |||| ||||||||||| ||||||||| |||||||||| ||||||||    
T  23912799 agaacatccgaataacttttcaacttatatggttagcttgtgtttgagtgatttg 23912853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 41038749 - 41038715
Alignment:
Q  257 gaatcgttacaacatcttcttgacaaaattaagct 291  Q
    ||||||||||||||||||||||| |||||||||||    
T  41038749 gaatcgttacaacatcttcttgaaaaaattaagct 41038715  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 319
Target Start/End: Original strand, 10337805 - 10337864
Alignment:
Q  260 tcgttacaacatcttcttgacaaaattaagcttcaatcctactagtggttgaaagcgaat 319  Q
    |||||||| || ||| |||||||||||||| ||||||  || ||||||||||||||||||    
T  10337805 tcgttacatcaacttattgacaaaattaagtttcaatgataatagtggttgaaagcgaat 10337864  T

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