View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17896_low_17 (Length: 363)

Name: NF17896_low_17
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17896_low_17
NF17896_low_17
[»] chr3 (26 HSPs)
chr3 (67-159)||(15039423-15039518)
chr3 (67-157)||(37681374-37681464)
chr3 (12-66)||(15039337-15039391)
chr3 (67-157)||(34413310-34413400)
chr3 (302-348)||(15039656-15039703)
chr3 (67-117)||(17583236-17583286)
chr3 (70-119)||(36637183-36637232)
chr3 (67-106)||(25441593-25441632)
chr3 (70-120)||(41835454-41835504)
chr3 (67-113)||(50585766-50585812)
chr3 (67-116)||(20037591-20037640)
chr3 (67-115)||(6835398-6835446)
chr3 (77-141)||(19226141-19226205)
chr3 (74-145)||(5846284-5846355)
chr3 (94-157)||(30333864-30333927)
chr3 (67-102)||(47410942-47410977)
chr3 (67-102)||(47411078-47411113)
chr3 (92-157)||(10613866-10613932)
chr3 (71-117)||(49428607-49428653)
chr3 (68-113)||(2594506-2594551)
chr3 (70-103)||(22934575-22934608)
chr3 (67-108)||(34230507-34230548)
chr3 (90-123)||(51940254-51940287)
chr3 (75-119)||(8231676-8231720)
chr3 (67-123)||(32828252-32828308)
chr3 (67-103)||(46851168-46851204)
[»] chr8 (18 HSPs)
chr8 (71-153)||(2442275-2442357)
chr8 (73-148)||(9183964-9184039)
chr8 (73-128)||(30567790-30567845)
chr8 (74-157)||(13766668-13766751)
chr8 (67-142)||(23870740-23870815)
chr8 (67-119)||(11420410-11420462)
chr8 (78-145)||(2442403-2442470)
chr8 (67-106)||(23038514-23038553)
chr8 (75-113)||(4437487-4437525)
chr8 (75-113)||(4438568-4438606)
chr8 (67-117)||(15920089-15920138)
chr8 (71-113)||(36067976-36068018)
chr8 (75-116)||(39131795-39131836)
chr8 (67-104)||(40721263-40721300)
chr8 (67-103)||(14449817-14449853)
chr8 (85-121)||(15172389-15172425)
chr8 (73-113)||(34103466-34103506)
chr8 (67-127)||(34151139-34151198)
[»] chr5 (21 HSPs)
chr5 (67-157)||(25537004-25537094)
chr5 (67-154)||(835646-835732)
chr5 (67-157)||(12095832-12095922)
chr5 (67-145)||(17705425-17705503)
chr5 (67-123)||(42522704-42522760)
chr5 (67-157)||(27175196-27175286)
chr5 (75-121)||(29663436-29663482)
chr5 (67-148)||(31364187-31364267)
chr5 (67-123)||(24090632-24090688)
chr5 (70-117)||(19840363-19840410)
chr5 (72-119)||(39850432-39850479)
chr5 (67-117)||(13998614-13998664)
chr5 (67-105)||(14000849-14000887)
chr5 (67-117)||(17822172-17822222)
chr5 (67-113)||(29686221-29686267)
chr5 (67-121)||(31314468-31314521)
chr5 (71-157)||(39178083-39178169)
chr5 (67-105)||(40693304-40693342)
chr5 (67-135)||(11832451-11832520)
chr5 (67-115)||(3165644-3165692)
chr5 (67-119)||(35373307-35373359)
[»] chr1 (24 HSPs)
chr1 (79-141)||(11080202-11080264)
chr1 (76-136)||(35112426-35112486)
chr1 (75-154)||(35056150-35056229)
chr1 (67-145)||(38339800-38339878)
chr1 (67-117)||(38340132-38340182)
chr1 (73-111)||(42825214-42825252)
chr1 (67-117)||(44717354-44717404)
chr1 (67-121)||(49840470-49840524)
chr1 (92-145)||(21967933-21967986)
chr1 (91-154)||(27972066-27972129)
chr1 (70-117)||(33129443-33129490)
chr1 (67-106)||(35633003-35633042)
chr1 (79-157)||(4353676-4353754)
chr1 (67-145)||(11067056-11067134)
chr1 (67-121)||(21966264-21966318)
chr1 (67-117)||(40780830-40780879)
chr1 (71-116)||(23749854-23749899)
chr1 (67-112)||(27348984-27349029)
chr1 (78-150)||(11461910-11461982)
chr1 (80-116)||(13288650-13288686)
chr1 (67-103)||(17248758-17248794)
chr1 (78-157)||(24612203-24612284)
chr1 (90-154)||(43115244-43115308)
chr1 (67-119)||(52675334-52675386)
[»] chr7 (26 HSPs)
chr7 (73-159)||(13703340-13703426)
chr7 (79-121)||(10039944-10039986)
chr7 (67-145)||(14623985-14624063)
chr7 (67-150)||(9059269-9059352)
chr7 (67-117)||(10039622-10039672)
chr7 (75-157)||(11485637-11485719)
chr7 (67-117)||(13640953-13641003)
chr7 (92-157)||(44549292-44549358)
chr7 (67-105)||(47437807-47437845)
chr7 (67-136)||(25603014-25603082)
chr7 (67-136)||(38237457-38237526)
chr7 (73-154)||(45634201-45634282)
chr7 (67-110)||(1292081-1292124)
chr7 (75-145)||(8145161-8145234)
chr7 (70-117)||(39959408-39959455)
chr7 (67-157)||(2475443-2475533)
chr7 (71-145)||(5318797-5318871)
chr7 (71-105)||(15647533-15647567)
chr7 (67-105)||(35338380-35338418)
chr7 (67-140)||(5789251-5789324)
chr7 (91-156)||(21305053-21305118)
chr7 (67-103)||(4492648-4492684)
chr7 (85-157)||(13640670-13640742)
chr7 (79-119)||(24650011-24650051)
chr7 (85-121)||(36471597-36471633)
chr7 (85-121)||(46452818-46452854)
[»] chr6 (17 HSPs)
chr6 (77-131)||(32570359-32570413)
chr6 (67-119)||(8866858-8866910)
chr6 (80-154)||(20603899-20603972)
chr6 (67-113)||(32279611-32279657)
chr6 (76-117)||(16436910-16436951)
chr6 (67-155)||(3533247-3533335)
chr6 (79-123)||(4578000-4578044)
chr6 (67-119)||(7980527-7980579)
chr6 (67-117)||(32937789-32937839)
chr6 (75-141)||(33490613-33490679)
chr6 (67-104)||(8872564-8872601)
chr6 (77-118)||(14912493-14912534)
chr6 (75-116)||(23649885-23649926)
chr6 (79-116)||(29178431-29178468)
chr6 (68-117)||(32939293-32939342)
chr6 (67-103)||(5414777-5414813)
chr6 (67-103)||(16241509-16241545)
[»] chr2 (16 HSPs)
chr2 (67-157)||(11538401-11538491)
chr2 (67-132)||(744884-744949)
chr2 (67-117)||(34983787-34983837)
chr2 (67-157)||(31525284-31525374)
chr2 (71-117)||(40303016-40303062)
chr2 (67-157)||(44856852-44856942)
chr2 (75-148)||(12599555-12599628)
chr2 (70-119)||(23914606-23914655)
chr2 (74-157)||(14706309-14706392)
chr2 (74-117)||(31054316-31054359)
chr2 (79-145)||(1071697-1071763)
chr2 (71-105)||(34423875-34423909)
chr2 (70-119)||(9740596-9740645)
chr2 (67-140)||(10643624-10643697)
chr2 (79-115)||(3752472-3752508)
chr2 (77-113)||(21925415-21925451)
[»] chr4 (22 HSPs)
chr4 (67-121)||(1237537-1237591)
chr4 (67-157)||(26492395-26492485)
chr4 (71-148)||(33997687-33997764)
chr4 (71-117)||(7712982-7713028)
chr4 (67-105)||(32820038-32820076)
chr4 (67-136)||(24916045-24916114)
chr4 (67-127)||(4505827-4505886)
chr4 (67-119)||(10564705-10564757)
chr4 (70-122)||(48458070-48458122)
chr4 (67-110)||(1014921-1014964)
chr4 (79-121)||(4608668-4608710)
chr4 (67-113)||(20004775-20004821)
chr4 (71-121)||(24670118-24670168)
chr4 (67-113)||(28704028-28704074)
chr4 (83-149)||(28715367-28715433)
chr4 (71-113)||(38490897-38490939)
chr4 (67-117)||(47683472-47683522)
chr4 (92-145)||(4379899-4379952)
chr4 (67-112)||(6028619-6028664)
chr4 (70-106)||(43028258-43028294)
chr4 (79-119)||(48458472-48458512)
chr4 (71-159)||(53354066-53354154)
[»] scaffold0003 (1 HSPs)
scaffold0003 (70-145)||(226359-226434)
[»] scaffold0018 (1 HSPs)
scaffold0018 (67-113)||(36818-36864)
[»] scaffold1017 (1 HSPs)
scaffold1017 (70-123)||(2029-2082)
[»] scaffold0025 (1 HSPs)
scaffold0025 (67-117)||(11696-11746)


Alignment Details
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 15039423 - 15039518
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatatt---atatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgttgc 159  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||    
T  15039423 ttggtgttattaaaaaagataataatttatattattatatttgctatattattggtgttactgaaaaagataaacatgatttattgggtgtgttgc 15039518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 67 - 157
Target Start/End: Original strand, 37681374 - 37681464
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 157  Q
    |||||| |||||||||||||||  |||||||||||||||| || ||||||| ||||| ||| ||| ||||||||||||| |||||||||||    
T  37681374 ttggtggtattaaaaaagataaggatttatattatatttgttaaattattgttgttattgaaaaagataaacatgattttttgggtttgtt 37681464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 15039337 - 15039391
Alignment:
Q  12 aagaaaatagaggattttgacctggctttttatcattttaattacagtcttaaac 66  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  15039337 aagaaaatagaggattttgacctggctttttatcattgtaattacactcttaaac 15039391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 157
Target Start/End: Original strand, 34413310 - 34413400
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 157  Q
    ||||||| ||| |||||||||||||||||||||||  ||| |||| |||| |||| ||||| | |||||||||||||||||| | ||||||    
T  34413310 ttggtgtcattcaaaaagataataatttatattattattgttatactatttgtgtcactgaaataaataaacatgatttatttgatttgtt 34413400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 302 - 348
Target Start/End: Original strand, 15039656 - 15039703
Alignment:
Q  302 aatggttaaaatagttgattaatc-ttagtttacaagtgttcaaatct 348  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  15039656 aatggttaaaatagttgattaatctttagtttacaagtgttcaaatct 15039703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 17583236 - 17583286
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattg 117  Q
    |||||||||||||||||||||| ||||| ||||||||||| ||||||||||    
T  17583236 ttggtgttattaaaaaagataagaatttttattatatttgttatattattg 17583286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 36637183 - 36637232
Alignment:
Q  70 gtgttattaaaaaagataataatttatattatatttgctatattattggt 119  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||||||||    
T  36637183 gtgttattaaaaaagataagaatttttattatatttgttatattattggt 36637232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 106
Target Start/End: Complemental strand, 25441632 - 25441593
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttg 106  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  25441632 ttggtgatattaaaaaagataataatttatattatatttg 25441593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 41835504 - 41835454
Alignment:
Q  70 gtgttattaaaaaagataataatttatattatatttgctatattattggtg 120  Q
    |||| ||||||||| |||||||||||||||||| |||||||||| ||||||    
T  41835504 gtgtcattaaaaaatataataatttatattatagttgctatattgttggtg 41835454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 50585766 - 50585812
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatatt 113  Q
    ||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  50585766 ttggtgttattcaaaaagataaaaatttatattatatttgttatatt 50585812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 20037640 - 20037591
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattatt 116  Q
    |||||||||||||||||||||| ||||  ||||||||||| |||||||||    
T  20037640 ttggtgttattaaaaaagataagaattattattatatttgatatattatt 20037591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 6835398 - 6835446
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattat 115  Q
    |||||| |||||||||||||| |||||||||||||||||| || |||||    
T  6835398 ttggtggtattaaaaaagatactaatttatattatatttgttaaattat 6835446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 19226141 - 19226205
Alignment:
Q  77 taaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatg 141  Q
    |||||||||||| ||||||||||||||||| || ||||||| ||| | ||| ||| |||||||||    
T  19226141 taaaaaagataaaaatttatattatatttgttaaattattgttgtcattgaaaaagataaacatg 19226205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 5846284 - 5846355
Alignment:
Q  74 tattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgattt 145  Q
    |||||||||||||||  |||||||||||||||| || ||||||| | ||| ||| ||| ||||| |||||||    
T  5846284 tattaaaaaagataaagatttatattatatttgttaaattattgtttttattgaaaaagataaatatgattt 5846355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 30333927 - 30333864
Alignment:
Q  94 tatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 157  Q
    ||||||||||||| | |||| ||||||| | ||| ||| |||||||||||||||| ||||||||    
T  30333927 tatattatatttgttgtattgttggtgtcattgaaaaagataaacatgatttattaggtttgtt 30333864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 102
Target Start/End: Original strand, 47410942 - 47410977
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattata 102  Q
    |||||||||||||||||||||| |||||||||||||    
T  47410942 ttggtgttattaaaaaagataagaatttatattata 47410977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 102
Target Start/End: Original strand, 47411078 - 47411113
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattata 102  Q
    |||||||||||||||||||||| |||||||||||||    
T  47411078 ttggtgttattaaaaaagataagaatttatattata 47411113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 10613932 - 10613866
Alignment:
Q  92 tttatattatatttgctatattattggtgttactgagaaaaataaacatga-tttattgggtttgtt 157  Q
    ||||||||||||||| |||||||| | ||||| ||| ||||||||| |||| ||| |||||||||||    
T  10613932 tttatattatatttgttatattatagctgttattgaaaaaaataaatatgatttttttgggtttgtt 10613866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 49428607 - 49428653
Alignment:
Q  71 tgttattaaaaaagataataatttatattatatttgctatattattg 117  Q
    |||||||||||||||||| ||||| | ||||||||| ||||||||||    
T  49428607 tgttattaaaaaagataagaatttttcttatatttgttatattattg 49428653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 2594506 - 2594551
Alignment:
Q  68 tggtgttattaaaaaagataataatttatattatatttgctatatt 113  Q
    |||||| ||| |||||||||| ||||||||||||||||| ||||||    
T  2594506 tggtgtcattcaaaaagataagaatttatattatatttgttatatt 2594551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 22934608 - 22934575
Alignment:
Q  70 gtgttattaaaaaagataataatttatattatat 103  Q
    ||||||||||||||||||| ||||||||||||||    
T  22934608 gtgttattaaaaaagataagaatttatattatat 22934575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 34230548 - 34230507
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgct 108  Q
    ||||||| ||| |||||||||| |||||||||||||||||||    
T  34230548 ttggtgtcattcaaaaagataagaatttatattatatttgct 34230507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 51940254 - 51940287
Alignment:
Q  90 aatttatattatatttgctatattattggtgtta 123  Q
    ||||||||||||||||| ||||||||||||||||    
T  51940254 aatttatattatatttgttatattattggtgtta 51940287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 8231720 - 8231676
Alignment:
Q  75 attaaaaaagataataatttatattatatttgctatattattggt 119  Q
    |||||||||||||| |||||||||||||||| |||| || |||||    
T  8231720 attaaaaaagataagaatttatattatattttctattttgttggt 8231676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 32828308 - 32828252
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgtta 123  Q
    ||||||||||| |||||| ||| ||||||||||||||||  || ||||||| |||||    
T  32828308 ttggtgttattgaaaaaggtaaaaatttatattatattttttaaattattgttgtta 32828252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 46851168 - 46851204
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatat 103  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  46851168 ttggtgtcattcaaaaagataataatttatattatat 46851204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 71 - 153
Target Start/End: Original strand, 2442275 - 2442357
Alignment:
Q  71 tgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtt 153  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||| | | ||| ||| ||||||||||||| |||||||    
T  2442275 tgttattaaaaaagataaaaatttatattatatttgttatattattggtttcattgaaaaagataaacatgatttgttgggtt 2442357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 9184039 - 9183964
Alignment:
Q  73 ttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttatt 148  Q
    |||||||||| |||||  |||||||||||||||| ||||| |||| ||||| ||| ||| ||||||||||||||||    
T  9184039 ttattaaaaatgataaggatttatattatatttgttatataattgttgttattgaaaaagataaacatgatttatt 9183964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 30567845 - 30567790
Alignment:
Q  73 ttattaaaaaagataataatttatattatatttgctatattattggtgttactgag 128  Q
    |||||||||||||||||||||||||||||||||| || ||||||| ||||| ||||    
T  30567845 ttattaaaaaagataataatttatattatatttgttaaattattgttgttattgag 30567790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 13766668 - 13766751
Alignment:
Q  74 tattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 157  Q
    |||||| ||||||||  |||||||||||||||| || ||||||  ||||| ||| ||| |||||||| |||| |||||||||||    
T  13766668 tattaagaaagataaagatttatattatatttgttaaattattattgttaatgaaaaagataaacatcattttttgggtttgtt 13766751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 23870740 - 23870815
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatga 142  Q
    |||||| |||| ||||||||| | |||||||||||||||| || ||||||| ||||| ||| ||| ||||||||||    
T  23870740 ttggtgatattgaaaaagatattgatttatattatatttgttaaattattgttgttattgaaaaagataaacatga 23870815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 11420462 - 11420410
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggt 119  Q
    |||||||| || |||||||||| ||||||||||||||||| |||||| |||||    
T  11420462 ttggtgttgttcaaaaagataagaatttatattatatttgttatattgttggt 11420410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 2442403 - 2442470
Alignment:
Q  78 aaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgattt 145  Q
    |||||| |||| ||||| ||||||||||| ||||||||||||| || ||| ||| |||||||| ||||    
T  2442403 aaaaaatataagaatttgtattatatttgttatattattggtgctattgaaaaagataaacataattt 2442470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 23038514 - 23038553
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttg 106  Q
    |||||||||||||||||| ||| |||||||||||||||||    
T  23038514 ttggtgttattaaaaaaggtaagaatttatattatatttg 23038553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 4437525 - 4437487
Alignment:
Q  75 attaaaaaagataataatttatattatatttgctatatt 113  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  4437525 attaaaaaatataagaatttatattatatttgctatatt 4437487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 4438568 - 4438606
Alignment:
Q  75 attaaaaaagataataatttatattatatttgctatatt 113  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  4438568 attaaaaaagataagaatttatattatatttgttatatt 4438606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 15920089 - 15920138
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattg 117  Q
    |||||||||||||||| ||||| ||||| ||||||||||| ||||||||||    
T  15920089 ttggtgttattaaaaa-gataagaatttttattatatttgttatattattg 15920138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 36067976 - 36068018
Alignment:
Q  71 tgttattaaaaaagataataatttatattatatttgctatatt 113  Q
    ||||||| |||||||||| || |||||||||||||||||||||    
T  36067976 tgttatttaaaaagataagaacttatattatatttgctatatt 36068018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 39131795 - 39131836
Alignment:
Q  75 attaaaaaagataataatttatattatatttgctatattatt 116  Q
    |||||||||||||| ||| ||||||||||||| |||||||||    
T  39131795 attaaaaaagataagaatatatattatatttgttatattatt 39131836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 40721263 - 40721300
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatt 104  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  40721263 ttggtgttattaaaaaaggtaagaatttatattatatt 40721300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 14449817 - 14449853
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatat 103  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  14449817 ttggtgtcatttaaaaagataataatttatattatat 14449853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 15172425 - 15172389
Alignment:
Q  85 ataataatttatattatatttgctatattattggtgt 121  Q
    |||| |||||||||||||||||||||||| |||||||    
T  15172425 ataagaatttatattatatttgctatattgttggtgt 15172389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 34103466 - 34103506
Alignment:
Q  73 ttattaaaaaagataataatttatattatatttgctatatt 113  Q
    ||||||||||| |||| ||||||||||||||||| ||||||    
T  34103466 ttattaaaaaatataaaaatttatattatatttgttatatt 34103506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 34151139 - 34151198
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactga 127  Q
    ||||||| ||| |||||||||| ||||||||||||||||  |||||| ||||||| |||||    
T  34151139 ttggtgtcatttaaaaagataagaatttatattatattt-ttatattgttggtgtcactga 34151198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 67 - 157
Target Start/End: Original strand, 25537004 - 25537094
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 157  Q
    |||||| || |||||||||||| |||||| |||||||||| || ||||||| ||||||||| ||| ||||||||| ||| |||||||||||    
T  25537004 ttggtggtactaaaaaagataagaatttacattatatttgttaaattattgttgttactgaaaaagataaacatggttttttgggtttgtt 25537094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 835646 - 835732
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggttt 154  Q
    ||||||||||||||||| |||||||||||||||||||||| || ||||||  ||| | | ||||||||||||||| ||| || |||||    
T  835646 ttggtgttattaaaaaatataataatttatattatatttgttaaattattattgtca-ttagaaaaataaacatggtttgttcggttt 835732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 157
Target Start/End: Complemental strand, 12095922 - 12095832
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 157  Q
    |||||| |||| ||||||||||  |||||||||||||||| || |||||||   ||| ||| ||||||||||||| ||| |||||||||||    
T  12095922 ttggtggtattgaaaaagataaggatttatattatatttgttaaattattgtatttattgaaaaaaataaacatggttttttgggtttgtt 12095832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 17705425 - 17705503
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgattt 145  Q
    |||||| | ||||||||||||| ||||||||||||||||| || ||||||  ||||| ||| ||| |||||||||||||    
T  17705425 ttggtggtgttaaaaaagataaaaatttatattatatttgttaaattattcttgttattgaaaaagataaacatgattt 17705503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 42522760 - 42522704
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgtta 123  Q
    ||||||||||||||||| |||| ||||| ||||||||||| |||||||||| |||||    
T  42522760 ttggtgttattaaaaaatataagaatttttattatatttgttatattattgttgtta 42522704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 157
Target Start/End: Original strand, 27175196 - 27175286
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 157  Q
    |||||||||||||||||||||| ||||| | ||||||||| |||||||||  ||| | ||| ||| ||||| ||| ||| ||| |||||||    
T  27175196 ttggtgttattaaaaaagataagaatttttgttatatttgttatattattattgtcattgaaaaagataaatatggtttgttgagtttgtt 27175286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 29663436 - 29663482
Alignment:
Q  75 attaaaaaagataataatttatattatatttgctatattattggtgt 121  Q
    |||||||||||| ||||||||||||||||||| |||||| |||||||    
T  29663436 attaaaaaagattataatttatattatatttgttatattgttggtgt 29663482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 148
Target Start/End: Complemental strand, 31364267 - 31364187
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttatt 148  Q
    |||||||| |||||||| ||||||||| |||||| ||||||||| || ||||||| | ||| | | ||||||||||||||||    
T  31364267 ttggtgtttttaaaaaatataataatt-atattacatttgctattttcttggtgtcattgaaatatataaacatgatttatt 31364187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 24090688 - 24090632
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgtta 123  Q
    ||||||| ||| ||||||||||||||||||||  ||||||||| ||| |||||||||    
T  24090688 ttggtgtcattcaaaaagataataatttatatcttatttgctaaattgttggtgtta 24090632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 19840363 - 19840410
Alignment:
Q  70 gtgttattaaaaaagataataatttatattatatttgctatattattg 117  Q
    ||||||||||||||||||| ||||| ||||||||||  ||||||||||    
T  19840363 gtgttattaaaaaagataagaatttttattatatttattatattattg 19840410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 39850432 - 39850479
Alignment:
Q  72 gttattaaaaaagataataatttatattatatttgctatattattggt 119  Q
    ||||||||||| ||||| ||||||||||||||||  ||||||||||||    
T  39850432 gttattaaaaatgataagaatttatattatatttattatattattggt 39850479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 13998664 - 13998614
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattg 117  Q
    ||||||||||||||| |||||||||||| | ||||||||  ||||||||||    
T  13998664 ttggtgttattaaaatagataataatttttgttatatttattatattattg 13998614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 14000887 - 14000849
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatattt 105  Q
    ||||||| |||||||||||||| ||||||||||||||||    
T  14000887 ttggtgtcattaaaaaagataaaaatttatattatattt 14000849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 17822222 - 17822172
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattg 117  Q
    ||||||||||| |||||||||| ||||| | ||||||||| ||||||||||    
T  17822222 ttggtgttattgaaaaagataagaatttttgttatatttgttatattattg 17822172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 29686267 - 29686221
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatatt 113  Q
    ||||||| ||| |||||||||| ||||||||||||||||| ||||||    
T  29686267 ttggtgtcattcaaaaagataagaatttatattatatttgttatatt 29686221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 31314521 - 31314468
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgt 121  Q
    |||||||| |||||||| ||||||||| |||||||||||||||| || |||||||    
T  31314521 ttggtgtttttaaaaaatataataatt-atattatatttgctattttgttggtgt 31314468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 157
Target Start/End: Complemental strand, 39178169 - 39178083
Alignment:
Q  71 tgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 157  Q
    ||||||||||| |||||||||||| | ||||||||| ||||||| || ||| | ||| ||| ||||| ||| ||| || ||||||||    
T  39178169 tgttattaaaatagataataatttttgttatatttgttatattactgttgtcattgaaaaagataaatatggtttgtttggtttgtt 39178083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 40693342 - 40693304
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatattt 105  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  40693342 ttggtgttattaaaaaatataagaatttatattatattt 40693304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 11832451 - 11832520
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatat-ttgctatattattggtgttactgagaaaaata 135  Q
    ||||||| |||||||||||||| |||||||||||||| ||  |||||| ||||||| | ||| |||||||    
T  11832451 ttggtgtcattaaaaaagataagaatttatattatatatttttatattgttggtgtaattgaaaaaaata 11832520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 3165644 - 3165692
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattat 115  Q
    ||||||||||||||||| |||| |||| || |||||||| |||||||||    
T  3165644 ttggtgttattaaaaaatataaaaattcatgttatattttctatattat 3165692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 35373307 - 35373359
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggt 119  Q
    ||||||||||  |||||||||| ||||| ||||||||||| |||||| |||||    
T  35373307 ttggtgttatagaaaaagataagaatttttattatatttgttatattgttggt 35373359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 11080202 - 11080264
Alignment:
Q  79 aaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatg 141  Q
    |||||||||||||||||||||||||||| |||||||||||||| | ||| |||||||||||||    
T  11080202 aaaaagataataatttatattatatttgatatattattggtgtcattgaaaaaaataaacatg 11080264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 35112426 - 35112486
Alignment:
Q  76 ttaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataa 136  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||| ||| ||| ||||    
T  35112426 ttaaaaaagataagaatttatattatatttgctatattattagtgttattgaaaaagataa 35112486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 154
Target Start/End: Complemental strand, 35056229 - 35056150
Alignment:
Q  75 attaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggttt 154  Q
    ||||||| | |||| ||||||||| ||||||| |||||||||||||| | ||| ||| ||||||||||||| ||||||||    
T  35056229 attaaaataaataagaatttatatcatatttgatatattattggtgtcattgaaaaagataaacatgatttgttgggttt 35056150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 38339878 - 38339800
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgattt 145  Q
    |||||| |||||||||||||||  ||||||||||||| || || |||| || ||||| ||| ||| |||||||||||||    
T  38339878 ttggtggtattaaaaaagataaagatttatattatatatgttaaattactgttgttattgaaaaagataaacatgattt 38339800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 38340132 - 38340182
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattg 117  Q
    |||||||||||||||||||||| ||||| ||||| ||||| ||||||||||    
T  38340132 ttggtgttattaaaaaagataagaatttttattacatttgttatattattg 38340182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 42825214 - 42825252
Alignment:
Q  73 ttattaaaaaagataataatttatattatatttgctata 111  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  42825214 ttattaaaaaagataataatttatattataattgctata 42825252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 44717404 - 44717354
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattg 117  Q
    |||||||||||||||||||||| ||||| |||| |||||| ||||||||||    
T  44717404 ttggtgttattaaaaaagataagaatttttattttatttgttatattattg 44717354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 49840524 - 49840470
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgt 121  Q
    ||||||| ||||||||| |||| ||| ||||||||||||| ||||||||||||||    
T  49840524 ttggtgtcattaaaaaatataagaatgtatattatatttgttatattattggtgt 49840470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 21967933 - 21967986
Alignment:
Q  92 tttatattatatttgctatattattggtgttactgagaaaaataaacatgattt 145  Q
    ||||||||||||||  |||||||||| ||||| ||| |||||||||||||||||    
T  21967933 tttatattatattttttatattattgctgttattgaaaaaaataaacatgattt 21967986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 154
Target Start/End: Complemental strand, 27972129 - 27972066
Alignment:
Q  91 atttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggttt 154  Q
    |||||||||| ||||| || ||||||| ||||| ||| ||| ||||||||||||| ||||||||    
T  27972129 atttatattaaatttgttaaattattgttgttattgaaaaagataaacatgattttttgggttt 27972066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 33129443 - 33129490
Alignment:
Q  70 gtgttattaaaaaagataataatttatattatatttgctatattattg 117  Q
    ||||||||||||||||| | ||||||||||||||||| || |||||||    
T  33129443 gtgttattaaaaaagatgagaatttatattatatttgttaaattattg 33129490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 35633003 - 35633042
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttg 106  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  35633003 ttggtgttattaaaaaatataagaatttatattatatttg 35633042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 157
Target Start/End: Complemental strand, 4353754 - 4353676
Alignment:
Q  79 aaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 157  Q
    |||||||||| |||| |||| |||||||||||||| ||  ||||| ||| ||| | ||||||||||| || ||||||||    
T  4353754 aaaaagataagaattaatatcatatttgctatattgtttttgttattgaaaaagaaaaacatgatttgtttggtttgtt 4353676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 11067134 - 11067056
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgattt 145  Q
    |||||||||||||||||||||| ||||| | ||||||||  |||||||||  ||| | ||| ||| ||||| |||||||    
T  11067134 ttggtgttattaaaaaagataagaatttttgttatattttttatattattattgtcattgaaaaatataaatatgattt 11067056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 21966264 - 21966318
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgt 121  Q
    ||||||| ||| |||||||||| ||||||||||||||||| || ||| |||||||    
T  21966264 ttggtgtcattcaaaaagataagaatttatattatatttgttacattgttggtgt 21966318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 40780830 - 40780879
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattg 117  Q
    |||||||||||||||||||||| |||||||| |||||||| |||| |||||    
T  40780830 ttggtgttattaaaaaagataagaatttata-tatatttgttatactattg 40780879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 23749899 - 23749854
Alignment:
Q  71 tgttattaaaaaagataataatttatattatatttgctatattatt 116  Q
    ||||||| || ||||||||||||||||||||||||  |||||||||    
T  23749899 tgttattcaataagataataatttatattatatttattatattatt 23749854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 27348984 - 27349029
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatat 112  Q
    ||||||| ||| ||||| |||||||||||||||||||||| |||||    
T  27348984 ttggtgtcattcaaaaatataataatttatattatatttgttatat 27349029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 11461982 - 11461910
Alignment:
Q  78 aaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgg 150  Q
    |||||||||||  |||| ||||||||||| || |||| || ||||| ||| ||| ||||||||||||| ||||    
T  11461982 aaaaaagataaggatttgtattatatttgttaaattactgttgttattgaaaaagataaacatgattttttgg 11461910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 13288650 - 13288686
Alignment:
Q  80 aaaagataataatttatattatatttgctatattatt 116  Q
    |||| |||| |||||||||||||||||||||||||||    
T  13288650 aaaaaataagaatttatattatatttgctatattatt 13288686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 17248794 - 17248758
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatat 103  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  17248794 ttggtgttatttaaaaagataagaatttatattatat 17248758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 24612284 - 24612203
Alignment:
Q  78 aaaaaagataataatttatattatatttgctatattattggtgttactgagaaa---aataaacatgatttattgggtttgtt 157  Q
    |||||| |||||||||| ||||||||||||||||||||| |||| | ||| |||    ||||||||||||| || ||||||||    
T  24612284 aaaaaatataataattt-tattatatttgctatattatttgtgtcattgaaaaagatcataaacatgatttgttaggtttgtt 24612203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 43115244 - 43115308
Alignment:
Q  90 aatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggttt 154  Q
    |||||||||||||||||| |||| |||||||| | | | ||| |||||||| |||| ||||||||    
T  43115244 aatttatattatatttgcaatatcattggtgtcattaaaaaagataaacataatttgttgggttt 43115308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 52675334 - 52675386
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggt 119  Q
    ||||||||||| |||||||||| ||||| ||| ||||||| |||||| |||||    
T  52675334 ttggtgttattgaaaaagataagaatttttatcatatttgttatattgttggt 52675386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 159
Target Start/End: Original strand, 13703340 - 13703426
Alignment:
Q  73 ttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgttgc 159  Q
    |||||||||||||| ||||||| ||||||||||| |||||||||| ||| | ||| ||| ||||| ||||||| ||| |||||||||    
T  13703340 ttattaaaaaagatgataatttttattatatttgttatattattgttgtcattgaaaaagataaatatgatttgttgagtttgttgc 13703426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 10039986 - 10039944
Alignment:
Q  79 aaaaagataataatttatattatatttgctatattattggtgt 121  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  10039986 aaaaagataataatttatattatatttgctatattgttggtgt 10039944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 14624063 - 14623985
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgattt 145  Q
    |||||| | ||||||||||||| ||||||||||||||||| || |||| |  ||||| ||| |||||||||||||||||    
T  14624063 ttggtggtgttaaaaaagataaaaatttatattatatttgttaaattactcttgttattgaaaaaaataaacatgattt 14623985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 150
Target Start/End: Complemental strand, 9059352 - 9059269
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgg 150  Q
    ||||||||||||||||||||||  |||||||||||||||  || |||| || ||||| ||| ||| ||||||||| ||| ||||    
T  9059352 ttggtgttattaaaaaagataaagatttatattatatttattaaattactgttgttattgaaaaagataaacatggttttttgg 9059269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 10039672 - 10039622
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattg 117  Q
    ||||||| |||| ||||||||| |||||||||||||||| |||||||||||    
T  10039672 ttggtgtcattagaaaagataaaaatttatattatattttctatattattg 10039622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 11485637 - 11485719
Alignment:
Q  75 attaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 157  Q
    ||||||||||||||  ||||||||||||| || || |||| || || || ||| |||||||||||||| || |||||||||||    
T  11485637 attaaaaaagataaggatttatattatatatgttaaattactgttgctattgaaaaaaataaacatgaatttttgggtttgtt 11485719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 13640953 - 13641003
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattg 117  Q
    ||||| |||||||||||||| ||||||| ||||||||||| ||||||||||    
T  13640953 ttggttttattaaaaaagatgataatttttattatatttgttatattattg 13641003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 44549358 - 44549292
Alignment:
Q  92 tttatattatatttgctatattattggtgttactgagaaaaataaacatga-tttattgggtttgtt 157  Q
    ||||||||||||||| |||||||||| ||||| ||| ||| |||||||||| ||| |||||||||||    
T  44549358 tttatattatatttgttatattattgatgttattgaaaaagataaacatgatttttttgggtttgtt 44549292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 47437845 - 47437807
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatattt 105  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  47437845 ttggtgttattaaaaaagataagaatttatattatattt 47437807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 25603082 - 25603014
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataa 136  Q
    ||||||| ||||||||| |||| ||||| ||||||||||| |||| ||||| |||||| |||||||||||    
T  25603082 ttggtgtgattaaaaaa-ataagaatttttattatatttgatataatattgatgttaccgagaaaaataa 25603014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 38237526 - 38237457
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataa 136  Q
    ||||||| ||| |||||||||| ||||||||||||||||| |||||| || |||| | ||| ||||||||    
T  38237526 ttggtgtcattgaaaaagataagaatttatattatatttgttatattgtttgtgtcattgaaaaaaataa 38237457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 45634282 - 45634201
Alignment:
Q  73 ttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggttt 154  Q
    |||||||||||||||   ||||| ||||||||||||| ||||||| ||||| ||| ||| ||||||| | ||| ||||||||    
T  45634282 ttattaaaaaagatagggatttacattatatttgctaaattattgttgttattgaaaaatataaacacggttttttgggttt 45634201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 1292124 - 1292081
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctat 110  Q
    ||||||| |||||||||||||| |||||||||||||||| ||||    
T  1292124 ttggtgtcattaaaaaagataagaatttatattatattttctat 1292081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 8145161 - 8145234
Alignment:
Q  75 attaaaaaagataataatttatattata---tttgctatattattggtgttactgagaaaaataaacatgattt 145  Q
    ||||||||| |||| |||||||||||||   ||||||||||| ||||||| | ||| ||| |||||||||||||    
T  8145161 attaaaaaatataagaatttatattatactatttgctatattgttggtgtcattgaaaaagataaacatgattt 8145234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 39959408 - 39959455
Alignment:
Q  70 gtgttattaaaaaagataataatttatattatatttgctatattattg 117  Q
    |||| ||| ||||| |||||||||||||||||||||| ||||||||||    
T  39959408 gtgtcattcaaaaaaataataatttatattatatttgttatattattg 39959455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 157
Target Start/End: Original strand, 2475443 - 2475533
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 157  Q
    ||||||||| |||||||||||| ||||| ||||||||||  || ||||||| |||   ||| ||||||||| || |||| ||| |||||||    
T  2475443 ttggtgttactaaaaaagataagaatttttattatatttattacattattgttgtcgttgaaaaaaataaatataatttgttgagtttgtt 2475533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 145
Target Start/End: Original strand, 5318797 - 5318871
Alignment:
Q  71 tgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgattt 145  Q
    ||||||||||||  |||| |||||||||||| |||| |||||| |||||||   ||  |||||||||||||||||    
T  5318797 tgttattaaaaagtataagaatttatattatgtttgttatattgttggtgtctttggaaaaaataaacatgattt 5318871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 15647533 - 15647567
Alignment:
Q  71 tgttattaaaaaagataataatttatattatattt 105  Q
    |||||||||||||||||| ||||||||||||||||    
T  15647533 tgttattaaaaaagataaaaatttatattatattt 15647567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 35338380 - 35338418
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatattt 105  Q
    ||||||| |||||||||||||| ||||||||||||||||    
T  35338380 ttggtgtcattaaaaaagataagaatttatattatattt 35338418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 5789251 - 5789324
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacat 140  Q
    |||||| ||||||||||||||   |||||||||||||||| || ||||||| ||||| ||| ||| ||| ||||    
T  5789251 ttggtggtattaaaaaagatacagatttatattatatttgttaaattattgttgttattgaaaaatatatacat 5789324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 21305118 - 21305053
Alignment:
Q  91 atttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgt 156  Q
    ||||||||||||||||||||||| ||||||| | | | || || ||| ||||||| ||||||||||    
T  21305118 atttatattatatttgctatattgttggtgtcattaaaaagaacaaatatgatttgttgggtttgt 21305053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 4492648 - 4492684
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatat 103  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  4492648 ttggtgttatttaaaaagataagaatttatattatat 4492684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 157
Target Start/End: Original strand, 13640670 - 13640742
Alignment:
Q  85 ataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 157  Q
    |||| ||||||||||||||||| || ||||||| ||||| ||  ||| ||||||||| ||| ||| |||||||    
T  13640670 ataagaatttatattatatttgttaaattattgttgttattgtaaaagataaacatggtttgttgagtttgtt 13640742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 24650011 - 24650051
Alignment:
Q  79 aaaaagataataatttatattatatttgctatattattggt 119  Q
    |||||||||| ||||||||||||||||| |||||| |||||    
T  24650011 aaaaagataagaatttatattatatttgttatattgttggt 24650051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 36471633 - 36471597
Alignment:
Q  85 ataataatttatattatatttgctatattattggtgt 121  Q
    |||||||||||||||||||||| |||||| |||||||    
T  36471633 ataataatttatattatatttgttatattgttggtgt 36471597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 46452818 - 46452854
Alignment:
Q  85 ataataatttatattatatttgctatattattggtgt 121  Q
    |||| |||||||||||||||| |||||||||||||||    
T  46452818 ataaaaatttatattatattttctatattattggtgt 46452854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 32570413 - 32570359
Alignment:
Q  77 taaaaaagataataatttatattatatttgctatattattggtgttactgagaaa 131  Q
    |||||||||||| |||||||||||||||||||||||||||||||| | |||||||    
T  32570413 taaaaaagataagaatttatattatatttgctatattattggtgtgattgagaaa 32570359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 8866910 - 8866858
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggt 119  Q
    ||||||| |||||||||||||| ||||||||||||||||| |||||| |||||    
T  8866910 ttggtgtcattaaaaaagataagaatttatattatatttgttatattgttggt 8866858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 20603899 - 20603972
Alignment:
Q  80 aaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggttt 154  Q
    ||||||||||||||| ||||||||||| |||||||||||| |   ||| ||| ||||||||||||| ||||||||    
T  20603899 aaaagataataattt-tattatatttgttatattattggtttcgttgaaaaagataaacatgattttttgggttt 20603972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 32279657 - 32279611
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatatt 113  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  32279657 ttggtgtcattaaaaaagataagaatttatattatatttgttatatt 32279611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 16436951 - 16436910
Alignment:
Q  76 ttaaaaaagataataatttatattatatttgctatattattg 117  Q
    ||||||||||||| |||||||||||||||| |||||||||||    
T  16436951 ttaaaaaagataagaatttatattatattttctatattattg 16436910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 3533247 - 3533335
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttg 155  Q
    ||||||||||||||||| |||| || | |||||||||||  |||||||||| ||| | ||  ||| ||||||||||||| ||| |||||    
T  3533247 ttggtgttattaaaaaaaataagaaatcatattatattttttatattattgatgtcattggaaaagataaacatgatttgttgagtttg 3533335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 4578044 - 4578000
Alignment:
Q  79 aaaaagataataatttatattatatttgctatattattggtgtta 123  Q
    |||||||||| |||||||||||||||||||||||| || ||||||    
T  4578044 aaaaagataagaatttatattatatttgctatattgttagtgtta 4578000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 7980527 - 7980579
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggt 119  Q
    ||||| |||||||||||||||| ||||| ||||||||||| | ||||||||||    
T  7980527 ttggttttattaaaaaagataagaatttttattatatttgttttattattggt 7980579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 32937789 - 32937839
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattg 117  Q
    ||||||||| |||||||| ||| ||||||||||||||||| || |||||||    
T  32937789 ttggtgttactaaaaaaggtaagaatttatattatatttgttagattattg 32937839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 33490613 - 33490679
Alignment:
Q  75 attaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatg 141  Q
    |||||||| ||||| ||||||||||||||||| |||||||  ||||| | ||| | |||||||||||    
T  33490613 attaaaaaggataacaatttatattatatttgatatattaacggtgtgattgaaataaataaacatg 33490679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 8872601 - 8872564
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatt 104  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  8872601 ttggtgtcattaaaaaagataagaatttatattatatt 8872564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 14912534 - 14912493
Alignment:
Q  77 taaaaaagataataatttatattatatttgctatattattgg 118  Q
    |||||||||||| ||||||||||||||||| | |||||||||    
T  14912534 taaaaaagataaaaatttatattatatttgttttattattgg 14912493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 23649926 - 23649885
Alignment:
Q  75 attaaaaaagataataatttatattatatttgctatattatt 116  Q
    ||||||||| |||| |||||||||||||||| ||||||||||    
T  23649926 attaaaaaatataagaatttatattatattttctatattatt 23649885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 29178431 - 29178468
Alignment:
Q  79 aaaaagataataatttatattatatttgctatattatt 116  Q
    ||||||| || |||||||||||||||||||||||||||    
T  29178431 aaaaagacaagaatttatattatatttgctatattatt 29178468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 32939293 - 32939342
Alignment:
Q  68 tggtgttattaaaaaagataataatttatattatatttgctatattattg 117  Q
    ||||||||||||||| ||||| ||||| |||||||||||  |||||||||    
T  32939293 tggtgttattaaaaaggataagaatttttattatatttgtcatattattg 32939342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 5414777 - 5414813
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatat 103  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  5414777 ttggtgttatttaaaaagataagaatttatattatat 5414813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 16241545 - 16241509
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatat 103  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  16241545 ttggtgtcattaaaaatgataataatttatattatat 16241509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 157
Target Start/End: Original strand, 11538401 - 11538491
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 157  Q
    |||||||||||||||||||||| ||||| | ||||||||||||||| |||| ||| | ||| ||||||||| ||| ||| ||| |||||||    
T  11538401 ttggtgttattaaaaaagataagaatttttgttatatttgctatatgattgttgtcattgaaaaaaataaatatggtttgttgagtttgtt 11538491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 744949 - 744884
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaa 132  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||| ||| | ||| ||||||||    
T  744949 ttggtgttatttaaaaagataaaaatttatattatatttgctatattgttgatcttattgagaaaa 744884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 34983787 - 34983837
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattg 117  Q
    ||||||||||||||||||| |||||||| ||||||||||| ||||||||||    
T  34983787 ttggtgttattaaaaaagaaaataatttttattatatttgttatattattg 34983837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 157
Target Start/End: Original strand, 31525284 - 31525374
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 157  Q
    |||||| |||||||||||||||  |||||||||||||||| ||  |||||| ||||  ||| ||| ||||||||| ||| ||| |||||||    
T  31525284 ttggtggtattaaaaaagataaggatttatattatatttgttaacttattgttgtttttgaaaaagataaacatggttttttgagtttgtt 31525374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 40303062 - 40303016
Alignment:
Q  71 tgttattaaaaaagataataatttatattatatttgctatattattg 117  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||||||    
T  40303062 tgttattaaaaaagataagaatttttattatatttgttatattattg 40303016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 157
Target Start/End: Complemental strand, 44856942 - 44856852
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 157  Q
    ||||||||||| |||||||||| ||||| | ||||||||| |||||||||| ||| | ||| |||  |||| ||||||| ||| |||||||    
T  44856942 ttggtgttatttaaaaagataagaatttttgttatatttgttatattattgttgtcattgaaaaatgtaaatatgatttgttgagtttgtt 44856852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 12599555 - 12599628
Alignment:
Q  75 attaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttatt 148  Q
    ||||| |||||||| ||||||||||||||||| |||||||||||| | | ||| ||| ||||| || |||||||    
T  12599555 attaagaaagataagaatttatattatatttgttatattattggtataattgaaaaagataaatataatttatt 12599628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 23914606 - 23914655
Alignment:
Q  70 gtgttattaaaaaagataataatttatattatatttgctatattattggt 119  Q
    |||||||| |||||||||| ||||||||||||||||| |||||| |||||    
T  23914606 gtgttattgaaaaagataagaatttatattatatttgttatattgttggt 23914655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 14706309 - 14706392
Alignment:
Q  74 tattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 157  Q
    ||||||| |||||||| ||||||||| |||||| || |||| || ||||| ||| ||| |||||  |||||| |||||||||||    
T  14706309 tattaaagaagataatgatttatattgtatttgttaaattactgttgttattgaaaaagataaaactgattttttgggtttgtt 14706392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 31054316 - 31054359
Alignment:
Q  74 tattaaaaaagataataatttatattatatttgctatattattg 117  Q
    ||||||||||||||| ||||||||||||||||| || |||||||    
T  31054316 tattaaaaaagataagaatttatattatatttgttaaattattg 31054359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 145
Target Start/End: Original strand, 1071697 - 1071763
Alignment:
Q  79 aaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgattt 145  Q
    ||||| |||| ||||||||||||||||| |||||| || |||| | ||| ||| |||||||||||||    
T  1071697 aaaaaaataagaatttatattatatttgttatattgttagtgtcattgaaaaatataaacatgattt 1071763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 34423875 - 34423909
Alignment:
Q  71 tgttattaaaaaagataataatttatattatattt 105  Q
    |||||||||||||||||| ||||||||||||||||    
T  34423875 tgttattaaaaaagataagaatttatattatattt 34423909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 9740645 - 9740596
Alignment:
Q  70 gtgttattaaaaaagataataatttatattatatttgctatattattggt 119  Q
    ||||||||||||| ||||| ||||| ||||||||||| || |||||||||    
T  9740645 gtgttattaaaaatgataagaatttttattatatttgttacattattggt 9740596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 10643624 - 10643697
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacat 140  Q
    ||||||| ||| |||| ||||||||||||||||||||||  |||||| ||||| |   ||| ||||||||||||    
T  10643624 ttggtgtgattgaaaacgataataatttatattatatttattatattgttggtatcgttgaaaaaaataaacat 10643697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 3752508 - 3752472
Alignment:
Q  79 aaaaagataataatttatattatatttgctatattat 115  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  3752508 aaaaagataagaatttatattacatttgctatattat 3752472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 21925451 - 21925415
Alignment:
Q  77 taaaaaagataataatttatattatatttgctatatt 113  Q
    ||||||||||||  |||||||||||||||||||||||    
T  21925451 taaaaaagataaggatttatattatatttgctatatt 21925415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 1237537 - 1237591
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgt 121  Q
    ||||||| |||||||||||||| |||||||||||||||| ||||||| |||||||    
T  1237537 ttggtgtcattaaaaaagataagaatttatattatattttctatattgttggtgt 1237591  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 157
Target Start/End: Original strand, 26492395 - 26492485
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 157  Q
    |||||| | |||||||||||||  ||||||| |||||||| || ||||||| |||||||   ||| ||||||||||||| |||||||||||    
T  26492395 ttggtggtgttaaaaaagataaggatttatactatatttgttaaattattgttgttacttgaaaagataaacatgattttttgggtttgtt 26492485  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 33997764 - 33997687
Alignment:
Q  71 tgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttatt 148  Q
    |||||| |||||| |||| ||||||||||||||||| |||||||||| ||| |  || ||| ||||||||||||||||    
T  33997764 tgttatgaaaaaaaataagaatttatattatatttgttatattattgatgtcatcgaaaaagataaacatgatttatt 33997687  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 7712982 - 7713028
Alignment:
Q  71 tgttattaaaaaagataataatttatattatatttgctatattattg 117  Q
    ||||||||||||||||||| |||| ||||||||||| ||||||||||    
T  7712982 tgttattaaaaaagataatgatttttattatatttgttatattattg 7713028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 32820076 - 32820038
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatattt 105  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  32820076 ttggtgttattaaaaaagataaaaatttatattatattt 32820038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 24916045 - 24916114
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataa 136  Q
    ||||||| ||||||||||| || || |||||||||||||| |||||||||| ||||| ||| ||| ||||    
T  24916045 ttggtgtcattaaaaaagaaaagaaattatattatatttgttatattattgttgttattgaaaaagataa 24916114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 4505827 - 4505886
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactga 127  Q
    ||||||| ||| |||||||||| ||||||||||||||||  |||||| |||||||||||||    
T  4505827 ttggtgtcattcaaaaagataagaatttatattatattt-ttatattgttggtgttactga 4505886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 10564705 - 10564757
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattggt 119  Q
    ||||| |||||||||||||||||||||||||||| ||||  |||||| |||||    
T  10564705 ttggtattattaaaaaagataataatttatattaaatttattatattgttggt 10564757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 48458070 - 48458122
Alignment:
Q  70 gtgttattaaaaaagataataatttatattatatttgctatattattggtgtt 122  Q
    ||||||||||||||||||| | ||||||||||||||| |||||| ||| ||||    
T  48458070 gtgttattaaaaaagataagactttatattatatttgttatattgttgatgtt 48458122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 1014921 - 1014964
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctat 110  Q
    ||||||| |||||||||||| | |||||||||||||||||||||    
T  1014921 ttggtgtcattaaaaaagatcaaaatttatattatatttgctat 1014964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 4608710 - 4608668
Alignment:
Q  79 aaaaagataataatttatattatatttgctatattattggtgt 121  Q
    |||||||||| ||||||||||||||||| |||||| |||||||    
T  4608710 aaaaagataagaatttatattatatttgttatattgttggtgt 4608668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 20004821 - 20004775
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatatt 113  Q
    ||||||| ||||||||| |||| ||||||||||||||||| ||||||    
T  20004821 ttggtgtcattaaaaaatataagaatttatattatatttgttatatt 20004775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 24670118 - 24670168
Alignment:
Q  71 tgttattaaaaaagataataatttatattatatttgctatattattggtgt 121  Q
    ||||||| |||||||||| ||||||||||||||||  |||||| |||||||    
T  24670118 tgttatttaaaaagataagaatttatattatattttatatattgttggtgt 24670168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 28704074 - 28704028
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatatt 113  Q
    ||||||| |||||||||||| | ||||||||| ||||||||||||||    
T  28704074 ttggtgtcattaaaaaagatgagaatttatataatatttgctatatt 28704028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 28715433 - 28715367
Alignment:
Q  83 agataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattg 149  Q
    |||||| ||||||||||| |||||||||||| ||||||| | ||| ||||||||  || ||||||||    
T  28715433 agataagaatttatattacatttgctatattgttggtgtcattgaaaaaaataagtataatttattg 28715367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 38490939 - 38490897
Alignment:
Q  71 tgttattaaaaaagataataatttatattatatttgctatatt 113  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||    
T  38490939 tgttattaaaaaagataagaatttgtattatatttgttatatt 38490897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 47683472 - 47683522
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattg 117  Q
    ||||||| ||| ||||| |||| ||||||||||||||||| ||||||||||    
T  47683472 ttggtgtcattcaaaaatataagaatttatattatatttgttatattattg 47683522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 4379952 - 4379899
Alignment:
Q  92 tttatattatatttgctatattattggtgttactgagaaaaataaacatgattt 145  Q
    ||||||||||| || ||||||||||| ||||| ||| ||| |||||||||||||    
T  4379952 tttatattatacttactatattattgatgttattgaaaaagataaacatgattt 4379899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 6028664 - 6028619
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatat 112  Q
    ||||||| |||||||||||||| |||||||||||||| | ||||||    
T  6028664 ttggtgtcattaaaaaagataagaatttatattatatgtactatat 6028619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 43028294 - 43028258
Alignment:
Q  70 gtgttattaaaaaagataataatttatattatatttg 106  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  43028294 gtgttattcaaaaagataataatttatattgtatttg 43028258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 48458472 - 48458512
Alignment:
Q  79 aaaaagataataatttatattatatttgctatattattggt 119  Q
    ||||| |||| ||||||||||||||||| ||||||||||||    
T  48458472 aaaaaaataagaatttatattatatttgttatattattggt 48458512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 159
Target Start/End: Complemental strand, 53354154 - 53354066
Alignment:
Q  71 tgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgttgc 159  Q
    |||||||||||||||||| ||||| | ||||||||| ||||| |||| ||| | ||| ||| ||||| ||| |||  || |||||||||    
T  53354154 tgttattaaaaaagataagaatttttgttatatttgttatataattgttgtcattgaaaaagataaatatggttttgtgagtttgttgc 53354066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 145
Target Start/End: Complemental strand, 226434 - 226359
Alignment:
Q  70 gtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgattt 145  Q
    |||||||||||||| |||| ||||| ||||||||||| || ||||||| ||| | ||| ||||||||| |||||||    
T  226434 gtgttattaaaaaaaataagaatttttattatatttgttacattattgttgtcattgaaaaaaataaatatgattt 226359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 36818 - 36864
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatatt 113  Q
    |||||||||||||||||||||| ||||| ||||||||||| ||||||    
T  36818 ttggtgttattaaaaaagataagaatttttattatatttgttatatt 36864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1017 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1017
Description:

Target: scaffold1017; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 2082 - 2029
Alignment:
Q  70 gtgttattaaaaaagataataatttatattatatttgctatattattggtgtta 123  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||| || |||||    
T  2082 gtgttattaaaaaagataagaatttttattatatttgttatattaatgttgtta 2029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 11696 - 11746
Alignment:
Q  67 ttggtgttattaaaaaagataataatttatattatatttgctatattattg 117  Q
    |||||||||||||||||||||| ||||| | ||||||||  ||||||||||    
T  11696 ttggtgttattaaaaaagataagaatttttgttatatttattatattattg 11746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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