View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17896_low_18 (Length: 356)
Name: NF17896_low_18
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17896_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 347
Target Start/End: Complemental strand, 31536627 - 31536298
Alignment:
| Q |
18 |
ctgcttgaaagtatattgaagtttctccaaatccaaatatgacggtggacttttcgtataaccgaattgcctagctagttttcacaaaagaaaaacaatt |
117 |
Q |
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| T |
31536627 |
ctgcttgaaagtatattgaagtttctccaaatccaaatatgacggtggacttttcgtataaccgaattgcctagctagttttcacaaaagaaaaacaatt |
31536528 |
T |
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| Q |
118 |
aatgcaacataatcaatgaaatctcataagatattttatttatatgaaaattcaacattgtccaaatttatttaccaatttggtcagcagtgttgagacc |
217 |
Q |
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| T |
31536527 |
aatgcaacataatcaatgaaatctcataagatattttatttatatgaaaattcaacattgtccaaatttatttaccaatttggtcagcagtgttgagacc |
31536428 |
T |
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| Q |
218 |
attgctaaaccttcctgtgggaaatgaaatgtgaaaatcaatcccataataagggctatttgcttttgttttagagttgagaaaattgttagttcctaca |
317 |
Q |
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| T |
31536427 |
attgctaaaccttcctgtgggaaatgaaatgtgaaaatcaatcccataataagggctatttgcttttgttttagagttgagaaaattgttagttcctaca |
31536328 |
T |
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| Q |
318 |
tcaaatgttgagtcaccaaataagtataat |
347 |
Q |
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| T |
31536327 |
tcaaatgttgagtcaccaaataagtataat |
31536298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 186 - 337
Target Start/End: Original strand, 31532913 - 31533064
Alignment:
| Q |
186 |
tatttaccaatttggtcagcagtgttgagaccattgctaaaccttcctgtgggaaatgaaatgtgaaaatcaatcccataataagggctatttgcttttg |
285 |
Q |
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| T |
31532913 |
tatttacctatttggtcagcagtgttgagtccattgctgaaccttccagtggcaactgaataaggaaaatcaattccataataagggacattggcttttg |
31533012 |
T |
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| Q |
286 |
ttttagagttgagaaaattgttagttcctacatcaaatgttgagtcaccaaa |
337 |
Q |
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| T |
31533013 |
cagtagagttgataaaattgttggttccaacatcaaatgttgagtcaccaaa |
31533064 |
T |
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