View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17896_low_2 (Length: 664)

Name: NF17896_low_2
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17896_low_2
NF17896_low_2
[»] chr1 (1 HSPs)
chr1 (12-638)||(28953471-28954097)


Alignment Details
Target: chr1 (Bit Score: 599; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 12 - 638
Target Start/End: Complemental strand, 28954097 - 28953471
Alignment:
Q  12 agcagagagacaggcttcaaaagtagctaaggaacaagcagaattaatggccaataaggtaataatattttttaccttttaactaatagtaacaatgttt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28954097 agcagagagacaggcttcaaaagtagctaaggaacaagcagaattaatggccaataaggtaataatattttttaccttttaactaatagtaacaatgttt 28953998  T
Q  112 caattcacttttctgtgacattgtttagaacatcatcataaaggaaagaagaaaatgacactcatgtttttctgtcataactattattctgtttttgtgt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  28953997 caattcacttttctgtgacattgtttagaacatcatcataaaggaaagaagaaaatgacactcatgtttttctgacataacttttattctgtttttgtgt 28953898  T
Q  212 ttctatttctgaaataattgaaagttattttttgatagttggttgagttggaaaaattggttaaagaagagatcaaattaagagataaatctgagagaaa 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28953897 ttctatttctgaaataattgaaagttattttttgatagttggttgagttggaaaaattggttaaagaagagatcaaattaagagataaatctgagagaaa 28953798  T
Q  312 gcttaaatttttaaggaaaaagcttgaatctttcagcaaatcctccaaatcaaaacaactggggcattctgattcatcacagaattgtgaaaattcttgt 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28953797 gcttaaatttttaaggaaaaagcttgaatctttcagcaaatcctccaaatcaaaacaattggggcattctgattcatcacagaattgtgaaaattcttgt 28953698  T
Q  412 gggtcatcatcaattagttcaaattccaaatattcagaagcaaatgaaacaaaaaatcaagtaccaaatcaaaatgtttcagagacacaaaatagttcat 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28953697 gggtcatcatcaattagttcaaattccaaatattcagaagcaaatgaaacacaaaatcaagtaccaaatcaaaatgtttcagagacacagaatagttcat 28953598  T
Q  512 ccacatcaaaagattgtgagtctcagagtactgatgatgattcaagtagtaattcaaaaccaagctctgagtttgagaatttgaagaatgatgaaagcag 611  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28953597 ccacatcaaaagattgtgattctcagattactgatgatgattcaagtagtaattcaaaaccaagctctgagtttgagaatttgaagaatgatgaaagcag 28953498  T
Q  612 gtattattagattcatttgaacatgtg 638  Q
    |||||||||||||||||||||||||||    
T  28953497 gtattattagattcatttgaacatgtg 28953471  T

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