View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17896_low_21 (Length: 335)
Name: NF17896_low_21
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17896_low_21 |
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| [»] scaffold0201 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 1982374 - 1982066
Alignment:
| Q |
19 |
aaacaaaggttcccaacatgctctcacaatagcatgcacaaaaatcttccagaagcttgaaaaattcaaagaaaatttgaaagaggagagtcttgaggaa |
118 |
Q |
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| T |
1982374 |
aaacaaaggttcccaacatgctctcacaatagcatgcacaaaaatcttccagaagcttgaaaaattcaaagaaaatttgaaagaggagagtcttgaggaa |
1982275 |
T |
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| Q |
119 |
aaagaagttgagccacatgaagaagaaacttagtgtctaagagtaacaccttttaagaaaccacatgacaacaccacttcaacgccaccgccgaaggcac |
218 |
Q |
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| T |
1982274 |
aaagaagttgagccacatgaagaagaaacttagtgtctaagagtaacgccttttaagaaaccacatgacaacaccacttcaacgccaccgccgaaggcac |
1982175 |
T |
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| Q |
219 |
caccacacaacacaactatgatgtctctgccgcaattgaagtcattgaatccaccattgaagcaactgaatctgctcaaaactcagccaccatcatcgtc |
318 |
Q |
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| T |
1982174 |
caccacacaacacaactatgatgtctctgctgcaattgaagtcattgaatccaccattgaagcaactgaatctgctcaaaactcagccaccatcatcgtc |
1982075 |
T |
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| Q |
319 |
gatctctgc |
327 |
Q |
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| T |
1982074 |
gatctctgc |
1982066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 21 - 197
Target Start/End: Complemental strand, 25840138 - 25839962
Alignment:
| Q |
21 |
acaaaggttcccaacatgctctcacaatagcatgcacaaaaatcttccagaagcttgaaaaattcaaagaaaatttgaaagaggagagtcttgaggaaaa |
120 |
Q |
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| T |
25840138 |
acaaagcttcccaacaatatctcaaaatagcctgcgcaaaaatcttcgagaagtttgaaaaattaaaagaaaatttgaaagaggagagtgccgagaaaaa |
25840039 |
T |
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| Q |
121 |
agaagttgagccacatgaagaagaaacttagtgtctaagagtaacaccttttaagaaaccacatgacaacaccactt |
197 |
Q |
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| T |
25840038 |
ataaggtgaaccacacgaagaagcaactcagtgtctaatagtaacacctcttaaacaaacacatgacagcacgactt |
25839962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 334
Target Start/End: Complemental strand, 37089594 - 37089535
Alignment:
| Q |
275 |
ttgaagcaactgaatctgctcaaaactcagccaccatcatcgtcgatctctgctcctcct |
334 |
Q |
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| T |
37089594 |
ttgaagcgactgaatctgctcaaaactcagccgccaccatcgttaatctctgctcttcct |
37089535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 20799 - 20875
Alignment:
| Q |
152 |
tgtctaagagtaacaccttttaagaaaccacatgacaacaccacttcaacgccaccgccgaaggcaccaccacacaa |
228 |
Q |
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| T |
20799 |
tgtctacgagtagcacctcttaagcaaccatacatcaacaccacttcagcgccaccgtccagggcaccaccacacaa |
20875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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