View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17896_low_27 (Length: 282)
Name: NF17896_low_27
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17896_low_27 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 186 - 282
Target Start/End: Original strand, 31536853 - 31536949
Alignment:
| Q |
186 |
gtttgacgtattttctttgcagggagaagtgatttgccttgaaaagcaggtgcaccaatttgcattagtccacgaaaatatcactaagacattgggg |
282 |
Q |
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| T |
31536853 |
gtttgaagtattttctttgcagggagaggtgatttgccttgaaaagcaggtgcaccaatttgcatcagtccacgaaaatatcactaagacattgggg |
31536949 |
T |
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Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 31536666 - 31536755
Alignment:
| Q |
1 |
tggaattcttagatatacagggtacaaacaatcggtaacnnnnnnngattttgattacattattattagtactagttagtagtaatgattt |
91 |
Q |
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| T |
31536666 |
tggaattcttagatatacagggtacaaacaatcggtaacttcttt-gattttgattacattattattagtactagttagtagtaatgattt |
31536755 |
T |
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