View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17896_low_29 (Length: 277)
Name: NF17896_low_29
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17896_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 5 - 254
Target Start/End: Original strand, 39627229 - 39627478
Alignment:
| Q |
5 |
ttgtacacgtatgaataagattattattgctgcgttgatagccatctattacctgtaccttttagaagaagaaagtgatagtgaaagtgaagacacggac |
104 |
Q |
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| T |
39627229 |
ttgtacgcatatgaataagattattattgctgcgttgataggcatctattacctgtacattttggaagaagaaagtgatagtgaaagtgaagacacggac |
39627328 |
T |
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| Q |
105 |
actgataatgatacagatactgatatcgatacagaaacggaaagtactggaaggacaaatcaagttcttgatgatcaatagaaaaggaaacagctgcaat |
204 |
Q |
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| T |
39627329 |
actgataatgatacagatactgatatcgatacagaaacggaaagtactggaaggacaaatcaagttcttgatgatcaatagaaaaggaaacagctgcaat |
39627428 |
T |
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| Q |
205 |
tttgttagtacaaaagggatgattcggaaacttgagctttatgctctcat |
254 |
Q |
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| T |
39627429 |
tttgttagtacaaaagggatgattcggaaacttgagctttatgctctcat |
39627478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 39616503 - 39616750
Alignment:
| Q |
1 |
tccattgtacacgtatgaataagattattattgctgcgttgatagccatctattacctgtaccttttagaagaagaaagtgatagtgaaagtgaagacac |
100 |
Q |
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| T |
39616503 |
tccattgtacgcgtatgaataagattattattgctgcgttgataggcatctattacctgtaccttttagaagaagaaagtgacagtgaaagtgaagacag |
39616602 |
T |
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| Q |
101 |
ggacactgataatgatacagatactgatatcgatacagaaacggaaagtactggaaggacaaatcaagttcttgatgatcaatagaaaaggaaacagctg |
200 |
Q |
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| T |
39616603 |
------tgatagtgatacagatactgatattgatacggaaactgaaagtactggaaggacaaatgaagttcctgatgatcaatagaaaaggaaacagctg |
39616696 |
T |
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| Q |
201 |
caattttgttagtacaaaagggatgattcggaaacttgagctttatgctctcat |
254 |
Q |
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| T |
39616697 |
caattttgttagtacaaaagggatgattcggaaacttgagctttatgctctcat |
39616750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 72 - 201
Target Start/End: Complemental strand, 39583646 - 39583520
Alignment:
| Q |
72 |
gaagaaagtgatagtgaaagtgaagacacggacactgataatgatacagatactgatatcgatacagaaacggaaagtactggaaggacaaatcaagttc |
171 |
Q |
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| T |
39583646 |
gaagaaagtgacagtgaaagtgaagacacagacacagatagtgatacggatactgatagtgataccgaaactgaaagtacttgaaggacaaaccaagttc |
39583547 |
T |
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| Q |
172 |
ttgatgatcaatagaaaaggaaacagctgc |
201 |
Q |
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| T |
39583546 |
---ctgatcaatagaaaaggaaacaactgc |
39583520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 168 - 254
Target Start/End: Original strand, 24200314 - 24200400
Alignment:
| Q |
168 |
gttcttgatgatcaatagaaaaggaaacagctgcaattttgttagtacaaaagggatgattcggaaacttgagctttatgctctcat |
254 |
Q |
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| T |
24200314 |
gttcctgatgatcaatagaaaagaaaacagctgcaactttgttagtagaaaagggaagatttggaaacttgagctttatgctctcat |
24200400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 47532772 - 47532847
Alignment:
| Q |
33 |
gctgcgttgatagccatctattacctgtaccttttagaagaagaaagtgatagtgaaagtgaagacacggacactgata |
111 |
Q |
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| T |
47532772 |
gctgccttgatatgcatctatgacctgtaccttttggaag---aaagtgacagtgaaagtgaagccacagatactgata |
47532847 |
T |
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