View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17896_low_31 (Length: 268)
Name: NF17896_low_31
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17896_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 20 - 255
Target Start/End: Original strand, 12040146 - 12040381
Alignment:
| Q |
20 |
acatgaatctatagaaagnnnnnnntaacgtatttgattgatcattaaacaaaataaacaaaaacatggaaaagattcatatgatgttgttcttgttctg |
119 |
Q |
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| T |
12040146 |
acatgaatctatagaaagaaaaaaagaacatatttgattgatcattaaacaaaacaaacaaaaacatggaaaagattcaaatgatgttgttcttgttctg |
12040245 |
T |
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| Q |
120 |
nnnnnnnnnnnnngttatgccttgttactctgtttcacctagaaattttcctattataccttttgatgaagggtatacacctttgtttggagaccataac |
219 |
Q |
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| T |
12040246 |
tttttttatttttgttatgccttgttactctgtttcacctagaaattttcctattataccttttgatgaagggtatacacctttgtttggagaccataac |
12040345 |
T |
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| Q |
220 |
ttgatctttcattctgattccaaagctgttcatctc |
255 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
12040346 |
ttgatcattcattctgattccaaagctgttcatctc |
12040381 |
T |
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