View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17896_low_32 (Length: 265)
Name: NF17896_low_32
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17896_low_32 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 5 - 265
Target Start/End: Original strand, 11231286 - 11231546
Alignment:
| Q |
5 |
ctgtgctagcctaatctgttgaggaacatgaatgccaagagctgaaggaaaccaaagttgttgtcgactgttgtatatttgtgactgttgataccaaaaa |
104 |
Q |
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| T |
11231286 |
ctgtgctagcctaatctgttgaggaacatgaatgccaagagctgaaggaaaccaaagttgttgtcgactgtcgtatatttgtgactgttgataccaaaaa |
11231385 |
T |
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| Q |
105 |
cgaaggcnnnnnnnnncgtaaatatcagttagttgaattgagcattacttcggagagttaacaacatgcatcatggacaaagagtacaatnnnnnnntaa |
204 |
Q |
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| T |
11231386 |
cgaaggcaaaaaaaaacgtaaatatcagttagttgaattgagcataacttcggagagttaacagcatgcatcatggacaaagagtacaataaaaaaataa |
11231485 |
T |
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| Q |
205 |
catgcaagtgaaatattatcataaaattgagaatcatacacagaaatggataactcgttgc |
265 |
Q |
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| T |
11231486 |
catgcaagtgaaatattatcataaaattgagaatcatacacagaaatggataactcgttgc |
11231546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 259
Target Start/End: Original strand, 11243389 - 11243523
Alignment:
| Q |
124 |
aaatatcagttagttgaattgagcattacttcggagagttaacaacatgcatcatggacaaagagtacaatnnnnnnntaacatgcaagtgaaatattat |
223 |
Q |
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| T |
11243389 |
aaatatcagttaattaaattgagcataacttatgagagttaacgacatgcatcatcgacaaagagtacaat-aaaaaatcacatgcaagtgaattagtat |
11243487 |
T |
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| Q |
224 |
cataaaattgagaatcatacacagaaatggataact |
259 |
Q |
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| T |
11243488 |
tagaaaattgagaatcatacacagaactggataact |
11243523 |
T |
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