View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17896_low_35 (Length: 247)
Name: NF17896_low_35
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17896_low_35 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 39616275 - 39616505
Alignment:
| Q |
16 |
aattctcaggaaacttgatatgtgtttcaagatttttattttgattgtaatgatgtatgtgttgatatatttactctcttttctatgtaaattttcaata |
115 |
Q |
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| T |
39616275 |
aattctcaggaaacttgatatgtgtttaaagatttttattttgattgtaatgatgtatgtgttgatatatttactctcttttctatgtaaattttcaata |
39616374 |
T |
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| Q |
116 |
atataatgtagttaaactttaaatgcaggctttcaaatatgacgactagcttgtttagttcaaataaaaagtgtggtagaaatgatgatgatgatgaaga |
215 |
Q |
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| T |
39616375 |
atataatgtagtaaaacatt-aatgcagactttcaaatatgatgactagcttgtttagttcaaataaaaagcgtggtagaaatgatgatgatgatgaaga |
39616473 |
T |
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| Q |
216 |
agagcgaaagcagaagcaaaggccaatcttcc |
247 |
Q |
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| T |
39616474 |
agagcgaaagcagaatcaaaggccaatcttcc |
39616505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 39626997 - 39627220
Alignment:
| Q |
16 |
aattctcaggaaacttgatatgtgtttcaagatttttattttgattgtaatgatgtatgtgttgatatat--ttactctcttttctatgtaaattttcaa |
113 |
Q |
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| T |
39626997 |
aattctcaggaaaattgat--gtgtttgaatatttttattttgattgtaatgatatatgtgttgatatatatttactctcttttctatgtaaatttccaa |
39627094 |
T |
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| Q |
114 |
taatataatgtagttaaactttaaatgcaggctttcaaatatgacgactagcttgtttagttcaaataaaaagtgtggtagaaatgatgatgatgatgaa |
213 |
Q |
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| T |
39627095 |
taatataatgtagttaaacattaa-tgcagactttcaagtatgacaactagcttgtttagttcaaataataaacgtggtagaaatgatgatgatgatgaa |
39627193 |
T |
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| Q |
214 |
gaagagcgaaagcagaagcaaaggcca |
240 |
Q |
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| T |
39627194 |
gaagagcgaaagcagaagcaaaggcca |
39627220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 39583808 - 39583745
Alignment:
| Q |
139 |
tgcaggctttcaaatatgacgactagcttgtttagttcaaataaaaagtgtggtagaaatgatg |
202 |
Q |
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| T |
39583808 |
tgcaggctttcaagtatgacaaatagcgtgtttagttcgaataaaaaacgtggtggaaatgatg |
39583745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 209
Target Start/End: Original strand, 47532621 - 47532710
Alignment:
| Q |
119 |
taatgtagttaaactttaaatgcaggctttcaaatatgacgactagcttgtttagttcaaataaaaagtgtggtagaaatgatgatgatga |
209 |
Q |
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| T |
47532621 |
taatgtagctaaactttaa-tgcaggatttcaagcatgacccctagcttgtttagctcaaataaaaaacgaggtagaaatgatgacgatga |
47532710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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